Variovorax paradoxus B4: VAPA_1c27670
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Entry
VAPA_1c27670 CDS
T02835
Name
(GenBank) putative intradiol ring-cleavage dioxygenase
KO
K00449
protocatechuate 3,4-dioxygenase, beta subunit [EC:
1.13.11.3
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00362
Benzoate degradation
vpd00624
Polycyclic aromatic hydrocarbon degradation
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
VAPA_1c27670
00624 Polycyclic aromatic hydrocarbon degradation
VAPA_1c27670
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.3 protocatechuate 3,4-dioxygenase
VAPA_1c27670
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Motif
Pfam:
Dioxygenase_C
CarboxypepD_reg
RavZ_cat
Motif
Other DBs
NCBI-ProteinID:
AGU49864
UniProt:
T1XC10
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All DBs
Position
1:2934681..2935313
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AA seq
210 aa
AA seq
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MNARSEPGLPRRTVAAALVAAPALWLGARAQAAASRLATPSQTEGPFYPVRLPQDSDHDL
LRNGTLDYRGGQPAWVDGTVTDLDGKPLRGAQVEIWQCDQNGHYHHPGDGDRADAAFQGF
GRVTVGEDGSYRFRTIRPVPYSGRTPHIHVKVKLGTRELLTTQLYAAGDPGNVRDFIWRN
LPQAAREAVTVPFERGADGLQARFPIAVAA
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcccgatcagaacccggccttccccggcgcaccgttgccgcagcgctcgttgcc
gcgcccgcactctggctcggcgcccgggcgcaggcggcggcaagccggctcgcaacgcct
tcgcagaccgaggggcccttctatcccgtccgcctgccgcaggattccgaccacgatctg
ctgcgcaacggcacgctggactaccgcggcggccagccggcctgggtcgacgggacagtg
accgatctcgacggcaagccgctgcgcggcgcgcaggtcgagatctggcaatgcgatcag
aacggccactaccaccaccccggcgacggcgaccgcgccgacgccgccttccagggcttc
ggccgcgtcacggtcggcgaggacggcagctaccgcttccgcaccatccgcccagtgccc
tacagcggccgcacgccgcacatccacgtcaaggtgaagctcggcacgcgcgagctgctg
accacgcagctctatgcggccggcgatccgggcaatgtgcgcgacttcatctggcgcaat
cttccgcaggctgcgagggaggccgtcacagtgcctttcgagcgcggggcggatgggctg
caggcgcgctttccgattgccgttgcggcctga
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