Variovorax paradoxus B4: VAPA_1c28080
Help
Entry
VAPA_1c28080 CDS
T02835
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c28080 (truB)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VAPA_1c28080 (truB)
Transfer RNA biogenesis [BR:
vpd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VAPA_1c28080 (truB)
Prokaryotic type
VAPA_1c28080 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AGU49905
UniProt:
T1XCL7
LinkDB
All DBs
Position
1:complement(2968547..2969503)
Genome browser
AA seq
318 aa
AA seq
DB search
MNAPRTRVQRRPVHGVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLC
FGAATKFSQLHLDADKTYEATARLGIKTATGDAEGEVIAERPVQVSPEDLARVEAQFTGP
IRQVPPMHSALKKDGKALYEYAREGIEIERAPRDVVIHKLALTQLDDSRIRIVACVSKGT
YIRTLGEDIGEALGCGAHLTFLRRTATGGFGEAECVTIEALEAMTEDERLARLLPAEALV
EGHSRVTLAAEDAARFLSGLRRRGGWADAEAVAVFGTDPQAFLGTAHVSAGELIPGRLLN
PIEIQQILLNAQQTEATP
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgccacgcacaagggtgcagcggcgccctgtgcatggggtgttgttgctcgac
aagccgctgggactctccagcaaccaggccttgcagaaggccaagtggttgctgcgcgcc
gaaaaagcgggccacaccggcacgctcgatccgctggccaccggcgtgctgccgctgtgc
tttggcgcggccaccaagttcagccagctgcacctcgatgccgacaagacctacgaggcc
acggcccgccttggcatcaagaccgccaccggcgatgccgagggcgaggtgattgccgag
cgcccggtgcaggtctcgcctgaagacctggcccgcgtcgaagcgcagttcaccggcccg
atccgccaggttccgccgatgcacagcgcgctcaagaaggacggcaaggcgctgtacgag
tacgcgcgcgaaggcatcgagatcgagcgggcgccgcgcgatgtcgtcattcacaagctc
gcgctgacgcagctggacgactcccgcatccgcatcgttgcgtgcgtgagcaagggcacc
tacattcgcacgctgggcgaggacatcggcgaggcactgggatgcggcgcgcacctgacg
ttcctgcgtcgcacagccacgggcggtttcggcgaggcggagtgcgtcacgatcgaagcg
ctcgaagccatgaccgaagacgagcgcctggcacgcctgttgcctgccgaagcgctggtc
gaaggccacagccgcgtcacgctcgccgccgaagatgcggcacgctttctttcaggcctg
cgccgccgtggcggctgggccgatgccgaagcggtggccgtgttcggcaccgacccgcag
gcgttcctgggcaccgcccatgtgagcgccggcgaactgatcccggggcgcttgctgaac
cccatcgaaatccagcaaattcttttgaacgcacaacagaccgaagcgacaccatga
DBGET
integrated database retrieval system
