Variovorax paradoxus B4: VAPA_1c28620
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Entry
VAPA_1c28620 CDS
T02835
Symbol
purD
Name
(GenBank) phosphoribosylamine-glycine ligase PurD
KO
K01945
phosphoribosylamine---glycine ligase [EC:
6.3.4.13
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00230
Purine metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
Module
vpd_M00048
De novo purine biosynthesis, PRPP + glutamine => IMP
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
VAPA_1c28620 (purD)
Enzymes [BR:
vpd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.13 phosphoribosylamine---glycine ligase
VAPA_1c28620 (purD)
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GFIT
Motif
Pfam:
GARS_A
GARS_N
GARS_C
ATP-grasp
ATP-grasp_3
CPSase_L_D2
RimK
ATP-grasp_4
ATP-grasp_5
Motif
Other DBs
NCBI-ProteinID:
AGU49957
UniProt:
T1XAK0
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All DBs
Position
1:complement(3027830..3029128)
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AA seq
432 aa
AA seq
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MKVLVIGGGGREHALAWRLAQASRVSRVYVAPGNGGTVSDERYDCIDITEPAALREWAAK
EKIALTVVGPEAPLAAGVVDEFRAHGLRIFGPTQAAAQLESSKAFSKAFMKRHKIPTAEY
EAFTDAAAAHAYIDAKGAPIVVKADGLAAGKGVVVAMTAQEAHEAVDFMLVDNKFGVSHN
DGGARVVIEEFLQGEEASFIVLCDGKNVTALATSQDHKRLLDNDEGPNTGGMGAYSPAPV
VTAEVHARAMREIILPTIRGMEKDGIPYTGFLYAGLMIDASGHPKTLEFNCRMGDPETQP
IMMRLKSDLFEVFWHATDGTLDQVELQWDRRVALGVVMAAHGYPLSPRKGDRITGIPAEA
PDAVVFHASTTQQGGELKTSGGRVLCVTVLADSVKLAQQRAYEVAARISFDGAQYRKDIG
HRAVHARNNPHA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtactggtaattggaggagggggccgggaacacgcactggcgtggcggctggcg
caggccagccgggtcagccgcgtgtacgtggcgccgggcaacggcggcaccgtgagcgac
gagcgctacgactgcatcgacatcaccgagcccgccgcgctgcgcgagtgggctgccaag
gaaaagatcgcgctcaccgtcgtcgggcccgaggcgccgctggcggcgggcgtggtggac
gaattccgcgcgcacggcctgcgcatcttcggccccacgcaggccgccgcgcagctcgag
agctccaaggccttctccaaggccttcatgaagcgccacaagatacccacggccgagtac
gaggccttcaccgatgcggccgcggcccacgcctacatcgacgccaagggcgcgccgatc
gtcgtcaaggccgatggcctggccgccggcaagggcgtggtggtggccatgaccgcgcag
gaagcgcacgaggccgtcgacttcatgctggtcgacaacaaattcggtgtgtcgcacaac
gacggcggcgcgcgcgtggtcatcgaggaattcctgcagggcgaggaagccagcttcatc
gtgctgtgcgacggcaagaacgtgaccgcgctggccaccagccaggaccacaaacgcctg
ctcgacaacgacgaaggccccaacaccggcggcatgggtgcctactcgcccgcgcccgtg
gtcacggccgaggtgcatgcgcgtgccatgcgcgaaatcatcctgccgaccatccgcggc
atggaaaaggatggcatcccgtacaccggcttcctgtacgccggcctcatgatcgacgcg
tcggggcaccccaagacgctcgagttcaactgccgcatgggcgaccccgaaacgcagccg
atcatgatgcggctcaagtccgacctgttcgaagtgttctggcacgccaccgacggcacg
ctcgaccaggtcgaactgcagtgggatcggcgcgtggcgcttggcgtggtgatggcggcg
cacggctatccgctctcgccgcgcaagggcgaccgcatcaccggcattccggccgaagcg
cccgatgccgtggtgttccatgccagcaccacccagcagggcggcgagctcaagaccagc
ggcggccgcgtgctgtgcgtgaccgtgctcgccgacagcgtgaagctcgcgcagcagcgg
gcctacgaagtcgccgcgcgcatcagcttcgacggtgcgcaataccgcaaggacatcgga
caccgcgcggtccacgcgcgcaacaacccgcacgcctga
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