Variovorax paradoxus B4: VAPA_1c29180
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Entry
VAPA_1c29180 CDS
T02835
Name
(GenBank) putative D-3-phosphoglycerate dehydrogenase
KO
K00058
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:
1.1.1.95
1.1.1.399
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00260
Glycine, serine and threonine metabolism
vpd00270
Cysteine and methionine metabolism
vpd00680
Methane metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
vpd01230
Biosynthesis of amino acids
Module
vpd_M00020
Serine biosynthesis, glycerate-3P => serine
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
VAPA_1c29180
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VAPA_1c29180
00270 Cysteine and methionine metabolism
VAPA_1c29180
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpd04147
]
VAPA_1c29180
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.95 phosphoglycerate dehydrogenase
VAPA_1c29180
1.1.1.399 2-oxoglutarate reductase
VAPA_1c29180
Exosome [BR:
vpd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
VAPA_1c29180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-Hacid_dh_C
2-Hacid_dh
AdoHcyase_NAD
KARI_N
NAD_binding_2
XdhC_C
TrkA_N
RS_preATP-grasp-like
ApbA
Motif
Other DBs
NCBI-ProteinID:
AGU50013
UniProt:
T1XBT8
LinkDB
All DBs
Position
1:3080162..3081169
Genome browser
AA seq
335 aa
AA seq
DB search
MNIVILDDYQDAVRKLRCAAKLDAYAAKVYTNTVKGIGQLSVRLKDADVIVLIRERTHIS
RQLIEKLPKLKLISQTGRVGGHIDVTACTERGVAVAEGTGSPQAPAELTWALIMAAMRRL
PQYISNLKHGAWQQSGLKSASMPPNFGLGSVLKGKTLCIWGYGRIGQLVARYGQAFGMQV
VIWGREASCAKARSDGFQVAQNRHEFFAAADVLSVHLRLNEETTGLVKLEDLSRMKPTAL
FVNTSRAELVEADALLAALNRGRPGLAAVDVFESEPPLQGHALLRLENCICTPHIGYVEQ
DSYESYFGQAFDNVVSFIKGNPTNIVNPGALQVRR
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgtgatcctcgacgattaccaggacgccgtgcgcaagctgcgctgcgccgcc
aagctggacgcgtacgcggccaaggtctacaccaacacggtcaaaggtatcggccagctc
tcggttcggctgaaggatgccgacgtgatcgtgctgatccgagagcgcacccatatttcg
cgccagctgatcgaaaagctccccaagctcaagctcatttcgcagacaggacgcgtgggt
ggccacatcgacgtcacggcctgcacagagcggggcgtggcagtggccgaaggcaccggc
tccccccaggcgcctgccgagctgacctgggcgctgatcatggcggccatgcgtcgcctg
ccgcagtacatcagcaacctcaagcacggggcctggcagcaatcggggctcaagtcggcg
tccatgccgcccaatttcgggctgggatcggtgctcaagggcaagacgctctgcatctgg
ggctacggccgcatcggccagctggtggcgcgctatgggcaggccttcggcatgcaggtg
gtgatctgggggcgcgaggcaagctgcgccaaggcccgctccgacggcttccaggtggcg
cagaaccgccacgagttcttcgccgcggccgacgtgctgtcggtgcacctgcggctcaac
gaggaaaccaccggcctggtcaagctcgaggatctttcgcgcatgaagccgacggcgctc
ttcgtcaacacctcccgcgccgaactggtcgaggccgatgccctgctggctgcgctcaac
cgcggccggcccgggctggctgccgtcgacgtgttcgagagcgagccgccgctgcagggc
catgcgctgctgcggctggaaaactgcatctgcacaccgcacatcggctatgtcgagcag
gacagctacgaaagctatttcggccaagctttcgacaacgtcgtgagtttcatcaagggc
aaccccaccaacatcgtgaaccccggcgcgctgcaggttcgtcggtga
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