Variovorax paradoxus B4: VAPA_1c29350
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Entry
VAPA_1c29350 CDS
T02835
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase, large chain CarB
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00220
Arginine biosynthesis
vpd00240
Pyrimidine metabolism
vpd00250
Alanine, aspartate and glutamate metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
VAPA_1c29350 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
VAPA_1c29350 (carB)
00220 Arginine biosynthesis
VAPA_1c29350 (carB)
Enzymes [BR:
vpd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
VAPA_1c29350 (carB)
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GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
ATPgrasp_Ter
Dala_Dala_lig_C
ATP-grasp_4
ATP-grasp_3
ATP-grasp_5
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AGU50030
UniProt:
T1XD02
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All DBs
Position
1:complement(3096799..3100047)
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AA seq
1082 aa
AA seq
DB search
MPKRSDLQSILIIGAGPIIIGQACEFDYSGVQACKALREEGYKVILINSNPATIMTDPAT
ADVTYIEPITWQTVEKIIAKERPDAILPTMGGQTALNCALDLWRHGVLDKYTGAATNKPV
ELIGATPEAIDKAEDRLKFKDAMTKIGLGSARSGIAHSMDEAWAVQKSVGFPTVIRPSFT
LGGTGGGIAYNPEEFETICKRGIEASPTNELLIEESLLGWKEYEMEVVRDKADNCIIVCS
IENLDPMGVHTGDSITVAPAQTLSDKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDG
RMVVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNEITGGATPASFEPSID
YVVTKIPRFAFEKFPQADSRLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGLNEKT
QDREVLEKELGEPGPERIWYVGDAFAMGLSVDEVFALTKIDPWFLVQIEEIVKIELELET
KSLDDIDKDTLLALKKKGFSDRRLARQLKTTDTAIREKRRALGVRPVYKRVDTCAAEFAT
NTAYMYSTYEDECEADPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMREDGYETIMV
NCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQYGGQTPLKLALDLEANGV
PIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEALEKAAALGYPLVVRPSYV
LGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAVECDVDCIRDAEGATLIGGV
MEHIEQAGVHSGDSACSLPPYSLQAETIAELKRQSAAMAKALNVVGLMNVQFAIQQKDGK
DVIYVLEVNPRASRTVPYVSKATGIQLAKVAARCMAGQSLASQGVTKEVTPPYFSVKEAV
FPFVKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQLGAGTHLPKSGKVFISVKNNDK
ARAVEVARGLVKLGFEIIATKGTAAAIGAAGIECATVNKVTEGRPHIVDMIKNNEIALVI
NTVEERRNAITDSRQIRTSALLARVTTFTTIFGAEAAVEGMGFMDELGVISVQEMHAQLA
AA
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcgctcagacctccaatccattctcatcatcggcgccggcccgatcatcatc
ggccaggcctgcgagttcgattactccggcgtgcaggcctgcaaggcgttgcgcgaggag
ggctacaaggtcatcctgatcaacagcaaccctgcgacgatcatgaccgacccggccacg
gccgacgtgacctacatcgagccgatcacctggcagacggtcgagaagatcatcgccaag
gagcgccccgacgcgatcctgccgaccatgggcggccagaccgcactcaactgcgcgctc
gacctctggcgccacggcgtgctcgacaagtacaccggcgcggccaccaacaagccggtc
gagctgattggcgccacgcccgaagccatcgacaaggccgaggaccgcctgaagttcaag
gacgcgatgaccaagatcggcctcggctcggcacgctccggcatcgcccattcgatggat
gaggcctgggccgtgcagaagtcggtcggctttccgacggtgatccgtcccagcttcacg
ctcggcggcaccggcggcggcattgcctacaacccggaagagttcgagaccatctgcaag
cgcggcatcgaagcctcgccgaccaacgagctgctgatcgaagagtcgctgctcggctgg
aaagagtacgagatggaagtcgtgcgcgacaaggccgacaactgcatcatcgtctgttcg
atcgaaaacctggacccgatgggcgtgcacactggcgactcgatcaccgtggcccccgcg
cagacgctgtccgacaaggaataccagatcctgcgcaacgcctcgctggccgtgctgcgc
gagatcggcgtcgataccggcggctcgaacgtgcagttctcgatcaacccgaaggacggc
cgcatggtcgtcatcgagatgaatccgcgcgtctcgcgttcgtcggcgctggcctccaag
gccacgggctttccgatcgccaaggtcgcggccaagctggccgtgggctacacgctcgac
gagctgcgcaacgagatcacgggcggtgccacgcccgcgtcgttcgaaccgtcgattgac
tacgtggtcaccaagatccctcgtttcgctttcgagaaattcccgcaggccgactcgcgc
ctcaccacgcagatgaagtcggtgggcgaagtgatggccatgggccgcaccttccaggag
tcgttccagaaggcgctgcgcggcctcgaagtgggcgtggacggcctcaacgagaagacg
caggaccgcgaagtgctcgagaaggagctgggcgagcccggccccgagcgcatctggtac
gtgggcgatgccttcgccatgggcctgagcgtggatgaagtgttcgcgctgaccaagatc
gacccgtggttcctggtgcagatcgaagagatcgtgaagatcgaactcgagctcgaaacc
aagtcgctggacgacatcgacaaggacacgctgctcgctctgaagaagaagggcttctcc
gaccgccgcctggcgcgccagctgaagaccaccgacaccgcgatccgcgagaagcgccgc
gccctgggcgtgcgcccggtctacaagcgcgtggacacctgcgcggccgagttcgcgacc
aacacggcctacatgtactcgacctacgaggacgagtgcgaagccgacccgacggacaag
aagaagatcatggtgctcggcggcggccccaaccgcatcggccagggcatcgagttcgac
tactgctgcgtgcatgccgcgctcgccatgcgcgaggacggctacgagaccatcatggtc
aactgcaaccccgaaaccgtgtcgaccgactacgacacctcggaccgcctgtacttcgag
ccgctgacgctcgaagacgtgctcgagatcgtcgacaaggaaaagccgctcggcgtgatc
gtgcaatacggcggccagacgccgctcaaactcgcgctcgacctcgaggccaacggcgtg
ccgatcatcggcacctcgcccgacatgatcgacgcggccgaagaccgcgagcgcttccag
aagctgttgcatgagctgggcttgcgccagccgccgaacgccacggcgcgcaccgagccc
gaggcgctcgaaaaggccgcggcgctgggctacccgctggtggtgcgcccgagctacgtg
ctcggcggccgtgcgatggaaatcgtgcacgagcagcgcgacctcgagcgctacatgcgc
gaggccgtgaaggtcagcaacgactcgccggtgctgctcgaccgcttcctcaacgacgcc
gtcgaatgcgacgtcgactgcattcgcgacgccgaaggcgccaccctgatcggcggcgtg
atggaacacatcgaacaggccggcgtgcactcgggcgattccgcctgttcgctgccgccc
tacagcctgcaggccgagaccattgccgagctgaagcgccagagcgccgcgatggccaag
gccctgaacgtggtcggcctcatgaacgtgcagttcgcgatccagcagaaggacggcaag
gacgtcatctatgtgctcgaagtgaacccgcgggcttcccgcaccgtgccctacgtgagc
aaggccaccggcatccagctcgccaaggtggcggcacgctgcatggccggccagtcgctc
gcgtcgcagggcgtgacgaaggaagtcacgccgccgtacttcagcgtcaaggaagcggtg
ttcccgttcgtcaagttcccgggcgtggacaccatcctcggccccgagatgaagtcgacc
ggcgaagtgatgggcgtgggcaagaccttcggcgaagccttcgtgaaatcgcaactcggc
gcgggcacgcacctgccgaagtcgggcaaggtcttcatctcggtgaagaacaacgacaag
gcgcgcgccgtggaagtggcgcgcggcctggtcaagctgggcttcgagatcatcgccacc
aagggcacggccgccgccatcggcgccgccggcatcgaatgcgcgacggtgaacaaggtg
accgagggccgcccgcacatcgtcgacatgatcaagaacaacgagattgcgctggtcatc
aacacggtggaagagcgccgcaacgcgatcaccgattcgcggcagatccgcacctcggcg
ctgctggcgcgcgtgaccacgttcaccacgatcttcggcgccgaagccgcggtcgagggc
atgggcttcatggacgagctcggcgtgatctcggtgcaggagatgcacgcgcagctggcg
gcagcctga
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