Variovorax paradoxus B4: VAPA_1c31680
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Entry
VAPA_1c31680 CDS
T02835
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase GlyA
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00260
Glycine, serine and threonine metabolism
vpd00460
Cyanoamino acid metabolism
vpd00630
Glyoxylate and dicarboxylate metabolism
vpd00670
One carbon pool by folate
vpd00680
Methane metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
vpd01230
Biosynthesis of amino acids
vpd01240
Biosynthesis of cofactors
vpd04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VAPA_1c31680 (glyA)
09102 Energy metabolism
00680 Methane metabolism
VAPA_1c31680 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VAPA_1c31680 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
VAPA_1c31680 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
VAPA_1c31680 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
VAPA_1c31680 (glyA)
Enzymes [BR:
vpd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
VAPA_1c31680 (glyA)
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GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Aminotran_5
Cys_Met_Meta_PP
Beta_elim_lyase
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
AGU50256
UniProt:
T1XCP5
LinkDB
All DBs
Position
1:3342945..3344189
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AA seq
414 aa
AA seq
DB search
MYNRNILVEQTDPEIWAAIQAENARQEHHIELIASENYASPAVMAAQGSQLTNKYAEGYP
GKRYYGGCEYVDVAEQLAIDRVKQIFGADAANVQPHCGASANEAVMLAFLKPGDTIMGMS
LAEGGHLTHGMPLNMSGKWFNVVSYGLDANEAIDYDAMERKAHEHMPKLIIAGASAYSLR
IDFERFAKVAKDVGAIFMVDIAHYAGLVAAGVYPNPVPHADVVTSTTHKSLRGPRGGIIL
MKSQHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEAMAPEFKAYQQQVVKNAQIVADTLT
ERGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVR
IGTPAMTTRGFKDEEARITANLIADVLENPRDAANIDAVRAKVHALTSRFPVYR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaccgcaatatcctggtcgaacagaccgatcccgaaatctgggctgccatccag
gccgaaaacgcgcgccaggaacaccacatcgaactgatcgcgagcgaaaactacgcttcg
ccggccgtcatggccgcccagggttcgcagctcaccaacaaatacgccgaaggttacccg
ggcaagcgctactacggcggctgcgagtacgtcgacgtggccgagcaactggccatcgac
cgcgtcaagcagatcttcggcgccgacgccgccaacgtgcagccgcactgcggcgcctcg
gccaacgaggccgtgatgctggccttcctgaagcccggcgacaccatcatgggcatgagc
ctggccgaaggcggccacctgactcacggcatgcccctcaacatgagcggcaagtggttc
aacgtggtgagctacggcctggacgccaacgaagccatcgactacgacgcgatggaacgc
aaggcgcacgagcacatgcccaagctgatcatcgcgggcgcctcggcctactcgctgcgc
atcgacttcgagcgctttgccaaggtggccaaggacgtgggcgcgatcttcatggtcgac
atcgcccactacgccggcctggtggccgcgggcgtgtaccccaacccggtgccgcatgcc
gacgtggtcacatccaccacccacaagagcctgcgcggcccgcgcggcggcatcattttg
atgaagtcgcagcatgagaaagccatcaacagtgcgatcttcccgggcctgcaaggcggc
ccgctgatgcacgtgatcgccgccaaggccgtcgcgttcaaggaagccatggcgcccgag
ttcaaggcctaccagcagcaggtggtcaagaacgcccagatcgtggccgacaccctcacc
gagcgcggcctgcgcatcgtgagcggacgcaccgaaagccacgtgatgctggtcgatttg
cgcgccaagggcatcaccggcaaggaagccgaagccgtgctgggcagcgcccacatgacg
atcaacaagaacgcgatcccgaacgaccctgaaaagccgatggtgaccagcggcgtgcgc
atcggcacccccgccatgaccacgcgcggcttcaaggacgaagaggcgcgcatcaccgcg
aacctgatcgccgacgtgctagagaacccgcgcgacgccgccaacatcgatgcggtccgc
gccaaggtccacgcgctgacaagccggttcccggtctaccgctga
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