KEGG   Variovorax paradoxus B4: VAPA_1c31760
Entry
VAPA_1c31760      CDS       T02835                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd00740  Riboflavin metabolism
vpd01100  Metabolic pathways
vpd01110  Biosynthesis of secondary metabolites
vpd01240  Biosynthesis of cofactors
vpd02024  Quorum sensing
Module
vpd_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    VAPA_1c31760 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VAPA_1c31760 (ribD)
Enzymes [BR:vpd01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     VAPA_1c31760 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     VAPA_1c31760 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: AGU50263
UniProt: T1XCH8
LinkDB
Position
1:3351325..3352422
AA seq 365 aa
MAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGFS
VAGATAFVTLEPCAHHGRTGPCCDALAATGIGRVVASMADPNPLVAGQGFERLRAAGVAV
EVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARTDGHA
WRARASAVLTGVGTVLEDDPRLDVRLVQTSRQPHVVVVDSQLQTPPGAQIFMAGRPVWIY
AAAQDGAKAAALEARGASITFMPNAQGKVDLAAMLRDLARREVNELHVEAGHKLNGSLLR
EGLVDELLVYLAPKLIGDGLDMASGIHTGGPLADLAGALPLEFRTVERIGPDLRIVARVA
GRDAF
NT seq 1098 nt   +upstreamnt  +downstreamnt
atggcccaggccctggacctcgcgcgccaggccggaccggagaccgaccccaatccgcgc
gtcggctgcgtgctggtggacgcgaatggcgcggtgatcggccagggccgcacccagcag
gtcggcggcccgcatgccgaggtcatggcgctgcgcgatgccgcggcgcggggcttttcg
gtcgccggcgccaccgccttcgtcacgctcgagccctgcgcgcaccacggccgcaccggc
ccctgctgcgatgcgctggcggcgacgggcatcggccgggtggtggcgtcgatggccgat
cccaacccactggttgccggccagggcttcgagcggctgcgcgccgcgggcgtggcggtc
gaggtggggccgggcgcggaggaagcacgcgagctcaacatcggctttttcagccgcatg
gtccgcaagacgccctgggtgcggctcaaggccgccgcctcgctggacggcaagaccggc
ctgcgcaacggcgtgagccaatggatcacctcggaaccggcgcgcaccgacggccacgcc
tggcgagcccgggccagcgcggtgctgaccggcgtgggcacggtgctggaggacgacccc
cggctcgacgtgcggttggtgcaaaccagccgccagccgcacgtggtggtggtcgacagc
caattgcagaccccgcccggcgcgcagatcttcatggccggccggcccgtctggatctac
gccgcggcgcaggacggcgccaaggccgcggcgctggaagcgcgcggcgccagcatcacc
tttatgcccaatgctcagggcaaggtcgacctcgcggcgatgctgcgggatctcgcccgg
cgcgaggtgaacgagctccacgtcgaggccgggcacaagctcaatggctcgctgctgcgc
gagggcctggtcgacgagctgctggtgtacctggcgccgaagctcatcggcgacgggctc
gacatggcttccggcattcataccggcgggccgctggccgacctggccggcgccctgccg
ctggaattcaggaccgtcgagcggatcgggccggacctccggatcgtggcccgggtcgct
ggaagggacgctttctag

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