Variovorax paradoxus B4: VAPA_1c31860
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Entry
VAPA_1c31860 CDS
T02835
Symbol
dnaE1
Name
(GenBank) DNA polymerase 3, subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03030
DNA replication
vpd03430
Mismatch repair
vpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAPA_1c31860 (dnaE1)
03430 Mismatch repair
VAPA_1c31860 (dnaE1)
03440 Homologous recombination
VAPA_1c31860 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpd03032
]
VAPA_1c31860 (dnaE1)
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c31860 (dnaE1)
Enzymes [BR:
vpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VAPA_1c31860 (dnaE1)
DNA replication proteins [BR:
vpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VAPA_1c31860 (dnaE1)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VAPA_1c31860 (dnaE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGU50273
UniProt:
T1XCI8
LinkDB
All DBs
Position
1:complement(3359128..3362646)
Genome browser
AA seq
1172 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKP
VIGAEIFIEGLGKEPGVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQAACKLEWL
EELQGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQRAGRPEDEPH
VIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVRKFTEEQYFK
SSAEMEALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRMPIDEFFRQE
SFEGLEARLAHLYPDVAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFIKWAKNNG
CPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVI
DYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGQPVTIQY
PPDPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPG
KLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEFIVKRHKGQE
NFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGP
MDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLR
RAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKSHAAAYSLLA
YHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGLTFEPPDVNRGNYRFEPVT
DKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTVEALIKAGA
FDAIQQNRASLIASVDRAFEFAAATEANAAQVDIFGDSEHGSATQEPELVDATPWGVKER
LTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLMDTRDQQVIAGIVSDFRVINGQRGR
LAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPGRGGFEARFQVQQVWDL
ATARCRFGKFLRVAVNGKAPDIARLVKDFPPRTEQSEHGDLVQGLPVRLSMARGGAQVEL
QLGERARFFPTDAALASWTAQADAGKASVVYE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcctgcacaccgagttttccgtcgtcgacggcaccaaccgcatc
gacgaagtcgtcaaggccgccgctgccgacaagcagcccgcactggccatcaccgacctc
aacaacctgttcggggcggtcaagttctacaagcaggggcgaagcaagggcgtcaagccc
gtcatcggcgctgaaatcttcatcgaagggctgggcaaggagcccggcgtgctcacccgc
atcgtgctgctggtgcagaacatggagggctacctgcacctgtccgagctgctggcgcgc
gcctggacgcagaacgtgggccggggccagtcgcaggcggcctgcaagctcgaatggctc
gaagagctgcagggcgggctgattgcgctttcgggcgcgcaggccggcccattgggcgcg
ccgctgctgcaggggcaggaagagcgcgccgccgagctggcgctgcagctggcgggcatg
ttcccgcaccgcttctacatcgaactgcagcgcgcgggccgccccgaggacgagccgcat
gtgattgccgccgtgaagctcgcggcccggctgcgcctgccggtggtcgcgacgcacccg
gtgcagttcgcggaacgccaggactacgaggcgcacgaggcgcgcgtctgcatctcggaa
ggcgaaatcctgggcaacccgcgccgcgtgcgcaagttcaccgaggagcagtacttcaag
tcgagcgccgaaatggaggcgctctttgccgacgtgccgagcgcgctggccaacacggtc
gagatcgccaagcgctgcaacctgacgctggtgctcggcaagccgcagctgcccgacttt
ccgacgcctttcgtcagcgaaggcgtgcgcatgccgatcgacgagtttttccgccaggag
tcgtttgaaggcctggaagcgcgtcttgcgcatctttaccccgacgtcgccaagcgcgat
gccgaacggccgcgctatgtggagcgcctcgagttcgagatcaacacgatcctgaacatg
ggcttccccggctacttcctgatcgtgggcgacttcatcaagtgggccaagaacaatggc
tgcccggtgggcccgggccggggctcgggcgcgggctcgctggtggcctacgcgttgaag
atcactgacctcgatccgctcgaatacaagctgctgttcgaacgtttcctgaaccccgag
cgtgtctcgatgcccgacttcgacatcgacttctgccagggcaaccgcgaccgcgtgatc
gactacgtcaaggacaagtacggccgcgacgccgtgagccagatcgccaccttcggaacg
atggccgcgcgcgccgccatccgcgacgtggggcgcgtgctggacatgagctacatgttc
tgcgacggcatcagcaagctcattccgaacaagccgggccagccggtcacgatccagtac
ccgcccgacccgaaggtggaaggcgacaagaacaactacgccatcgagatggagccgcag
ctcgcggcgcgcatcgagaaggaagaagaagtgcgcatgctggtcgagctggcgcagaag
ctcgagggcatgacgcgcaacatcggcatgcacgcgggcggcgtgctgattgcgcccggc
aagctcactgacttctgcccgctctaccagcagcccggcagcgattcggccgtgagccag
tacgacaaggacgacgtggaggccatcggcctcgtgaagttcgactttctgggcctggcc
acgctcacgatccttgagatcgcgaaagagttcatcgtcaagcgccacaagggccaggag
aacttcgcgtacgagaacatcaagctcgacgaccgcgagacctacaagctgttctccgag
ggcaagacggaagcggtgttccagtttgaaagccgcggcatgcagggcatgctgaaggat
gcgcggccgacgcggctggaggacctgattgcgctcaacgcgctgtaccgtccgggcccg
atggacctgatcccgagcttcgtggcgcgcaagcacggccgcgaagaggtggagtacccg
cacccggccgtggccgagatgctctccgaaacctacgggatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctactcgctcggcggcgccgacctgctgcgc
cgcgccatgggcaagaaaaagctcgaggagatggccgagcaccgcgagaaattccgcgcg
ggtgcgctctcgacgcacggcattccccaggacaaggccgacgagatcttcgacttgatg
gagaagttcgcgggctacggcttcaacaagtcgcacgccgccgcgtactcgctgctggcg
taccacacgggttggctcaaggtccattacacggccgagttcttctgcgccaacatgacc
gtggaaatggacgacaccgacaagctcaaggtgttgttcgaagacgcgcagaagaacttc
ggcctcaccttcgagccgccggacgtgaaccgcggcaactaccgcttcgagcccgtcacc
gacaaggtgatccgctacggcctgggggcggtcaagggcacgggccagctcgcggtcgag
gccgtggtgcgcgcacgggaagagggcgggccgttcaagagcctgttcgacttctgcgtg
cgcatcgaccgccagcgcatcaacaagcgcacggtcgaagcgctcatcaaggccggtgcc
ttcgacgcgatccagcagaaccgcgcgtcgctcatcgcctcggtcgaccgcgccttcgag
ttcgcagccgccaccgaggccaatgcggcgcaggtcgacatcttcggcgacagcgagcac
ggctcggccacgcaggagcccgagctggtggacgccacaccctggggcgtgaaggagcgg
ctcaccttcgagaagacggccgtgggcttctatctctcgggccatctgttcgacgaggtg
gcgcacgaggtgcggcgcttctgcaagcgcgagatcggcgacctgatggacacgcgcgac
cagcaggtgatcgcgggcatcgtgagcgatttccgcgtgatcaacggccagcgcgggcgc
ctggcgatcttcaagctcgacgacaagtcggacgccatcgacgccaccgccgacgaggcg
ctgatcaacgcgaaccgcaacaccttgaaggacgacgagctggtgatcgtgagcggccgg
ctccagccgggccgcggcggcttcgaggcccgcttccaggtgcagcaggtgtgggacctg
gccaccgcgcgctgccgtttcggaaaattcctgcgggtggccgtcaatggcaaggcgccc
gacatcgcgcgcctggtgaaagactttccaccgcgcaccgagcagagcgagcatggcgac
ctggtgcaggggctgccggtgcgcctgtcgatggcgcgcggcggcgcgcaggtcgagctg
cagctcggggagcgcgccaggttcttcccgacggacgccgcgctcgccagctggacggcg
caggcggacgccggcaaggcctcggtcgtttacgagtga
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