Variovorax paradoxus B4: VAPA_1c32830
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Entry
VAPA_1c32830 CDS
T02835
Symbol
pksJ
Name
(GenBank) putative polyketide synthase PksJ
Organism
vpd
Variovorax paradoxus B4
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
ketoacyl-synt
Acyl_transf_1
Aminotran_3
Ketoacyl-synt_C
PP-binding
CurL-like_PKS_C
KAsynt_C_assoc
RhiE-like_linker
AMP-binding_C
Thiolase_N
DUF7080
Motif
Other DBs
NCBI-ProteinID:
AGU50369
UniProt:
T1XDG3
LinkDB
All DBs
Position
1:3461696..3469087
Genome browser
AA seq
2463 aa
AA seq
DB search
MKIQLADPAQFAPPRFSLDDLFASRPNSDRPDERAQSSVALGEQSAQRWKQWLGATGQLP
DTPFAAAWLLLQARWLGEQQPALHEASKNGWAAATSRTAVAAAFDPAQPARTWLASLDQE
RRQATAAASPEPSPSVLWLRGDIGVDDVQAPLQLWLTTASDDSPRLHASAAASLLDAASA
EQLLAAIADTAADLLDRADSPLGSIRTLPAADREHQLADWNTAPSPLDRTLTVAGMFARQ
AAAAPDAIALAEGDAQMSYGELERESNQFAHRLQNLGVRAGDNVGLVLDRSMEAVVAQLG
ILKAGAAYVPVPTDFPPERIAYMLDEANSRQVVTTSALRHLVPASRAPLLLDETEGTESA
PWSAPAIDGESVAYVMYTSGSTGTPKGIEICHRAILRLVVGVDYAELAPGRNVLHAAPLG
FDAATFEIWGPLLNGGCCVVHGERVPTGAGLARTIARHHVHTAWLTAALFNAVIDDDPAH
FSGLRHLITGGEALSVPHVRRALAALPALALSNGYGPTECTTFAATHRIPAALPADLRSV
PIGRPIKDTVLRVLSPSMALLPTGLVGELCIGGHGLARGYLRQPRLTEERFVPDPFGATG
ERLYRTGDLVRWLPDGTLEFIGRRDGQVKIHGHRIETGEVEMAILAHPAIQACAVDARPD
ADGQLRLVAYLVARSHRLSWDALRTHLATRLPAALLPSAQVWLAQLPVTLNGKLDRRALP
EPAAERPDLAQPFEEARNAAEQRVCEAFARALHIEKAGRNDNFFDLGGDSLRVLQVLAEL
QRDSAQPLSTNLFFRHPTPSAMAAELETAADAASAPAAAPRTASAQPPLAETDPNMSEAI
ALIATAGRFPGAADVEQLWDNLVAGRDTISFFDDDTLDAGVSEALRKDPAYVRARGVIEG
IENFDAAFFGIGPKEAVLMDPQQRVFLEICWECLERAGYVPDAAPGPVGVYAGMYNASYF
QRHVATRPDLIEAVGEFQVMLANEKDYITTRVANRLNLTGPAVSIHTACSTSLVAVAHAF
HALRTGQCYMALAGGASVTCPPRSGYLYQEGSMLSPDGRTRSFDAQAQGTVFSDGAAVVL
LKRLADAQADGDTIYAVLRSACVNNDGGTKASFTAPSVDGQAAVIRAALAAANVDARSIS
YVEAHGTATPMGDPVEVEALTCAYAEHTGALGYCTLGSLKSNVGHMVTAAGAAGLIKAAL
SLHHEAIPPTAHFSAPNPAIDFARTPFYVSGSLQAWPRTSQPRRAGVSAFGVGGTNAHII
LEEAPARPVSASAGGPQVLSISARSEAALAVATEQLAAHLDATPGVPLADVAYTLSVGRK
AHAFRRAVVASDAAEAVAALRASDSPWRASGRVDSRAPQPVLMFPGQGAQYAGMGKILHA
SDPVFAAALDTCLKAFGGAVDFDLRERMFGTDPQALVPTAVTQPAIFAIEYALARRLLSL
GTRPHALIGHSVGEFVAAVLAGVMRLEDAARLVARRGALMQAQPAGAMLSVRLGALELAA
RLGPSLSLAADNGPTACVVAGPFDAIEALQAELQKDDIASRLLQTSHAFHSSMMDAAVAP
FEALVGEVALHPPTVPIFSTLTGRLLEDAEATSAAYWARHLRSTVQFSPAVRSAMAQTAR
PLFIEVGPRNTLATLVRQHGALEVMPLLHGEPADEARTLRLALARLWTCGADVELSRLAV
RTGAQRVRLPTYPFERKRFWVDIAATAASPAIASPVSPPASLPVAPPTPALFVPPPFLES
TVTAAAPPPLPSPASPAPTESMDARLRSLFEDISGIDMMQAEGHAAFGELGLDSLTLTQV
ATQIKKRFKVNLSFRQLMENYRSFDTLSAFLRESLPAEPVVAAASVSTAAVPLPVAVQAA
AAQPPAAFLPVVNAAATGGDIGSAPIVQLVAQQMELMRRQLALLSGAGMDALAAAPTMPT
AAASTAAVAAQPSADGPAPAREPQRYDVAKAFGAIARIHTQRTAEPSGRQKARLAAFMRR
YVERTQKSKQFTEANRPHMADPRVVNGFRPLTKEITYQIVIERSKGSKLWDLDGNEYVDA
LNGFGMNMFGWQPDFVQEAVRRQLDAGYEIGPQHPLAADVTGLICELTGCDRAALCNTGS
EAVMAALRIARTVTGRSTVVVFTGSYHGTFDEVLVRAGKGGKGLSAAPGVMSGMFGDIRV
LDYGTPEALAFIRENADDLAAVLAEPVQSRRPDFQPREFLQEVRAITEQSGTCFIFDEVI
TGFRVGLGGAQELFGVRADLATYGKVIGGGFPVGVIAGKRAFMDALDGGAWQYGDDSIPG
VGVTYFAGTFVRHPLALAAAKASLTHLKEAGPSLQTGLTGSTAAMADELTAWCLEVGAPI
AIRQFASLWRVSWLEDHPLQDLLFAMMRSRGVHILDNFPCFLTSAHSAEDIATIQRVFKE
SVAEMQESGFLPRRATVVTGFDYRKRCEEDGSVLARDVDGQPFWYVPDTSSPNPHLINGK
AAA
NT seq
7392 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcaattagccgatccggcgcaattcgcgcccccccgattttcattggatgat
ctgttcgcatcgcgccccaattcggacaggccggacgaacgggcccagagctcggtggcg
ctcggagagcagagcgcacagcgctggaagcaatggctcggcgccaccggccagctgccc
gacacccccttcgcggcggcgtggctgctgctccaggcgcgctggctcggcgagcagcag
ccggcgctgcacgaagcgtcgaagaacggatgggcagcggccacgagccggacggcggtc
gccgcggccttcgatccggcccaaccggcccgcacctggctggcctcgctcgaccaggaa
cggcgccaggccacagccgcagcttcgccggagccgtcgccgagcgttctctggctgcgc
ggcgacatcggagtcgacgatgtccaggccccccttcaactttggctgaccaccgcatcg
gacgactcgccgcgcctccatgccagcgcggcagcaagccttctggacgcggcatcggca
gagcaactgctcgcggccattgccgacaccgccgccgatctgctcgaccgggccgacagc
cccctcggcagcatccgcaccctgcccgccgccgaccgcgagcaccagctcgccgactgg
aacacggccccctctccccttgaccggaccctcaccgtggcagggatgttcgcccgccag
gccgcggccgcacccgatgccattgcgctcgcggaaggcgatgcgcagatgagctacggc
gagctcgagcgcgagtcgaaccagttcgcgcaccgcctgcagaacctgggcgtgcgggcg
ggcgacaacgtcggcctggtgctcgacaggtcgatggaggccgtggtggcgcagctcggc
atcctcaaggcgggcgcggcctatgtgccggtgccgacggatttcccgcccgagcggatc
gcctacatgctcgacgaggcgaactcgcggcaggtggtcaccacgtcggcgctgcgccat
ctcgtgcccgcgtcgcgtgcgccgctgctgctcgatgaaaccgagggcaccgaatccgcg
ccctggagcgctcccgccatcgacggtgaatcggtggcgtacgtgatgtacacctcgggc
tcgacgggcacgcccaagggcatcgagatctgccaccgcgcgatcctgcgcctggtggtc
ggcgtcgactatgccgagctggcgccgggccgcaacgtgctgcatgccgcgccgctcggc
ttcgatgccgccaccttcgagatctggggtccgctgctcaacggcggctgctgcgtggtc
cacggcgagcgcgtacccacgggcgccggccttgcccgcaccatcgcgcgccaccacgtg
cacaccgcctggctcacggccgcgctgttcaacgcggtgatcgacgacgacccggcgcac
ttctcgggcctgcggcatctcatcaccggcggcgaagcgctctcggtgccgcacgtgcgg
cgcgcactggccgcgcttccggcgcttgcgctcagcaacggctacgggccgaccgaatgc
accaccttcgcggccacccaccgcattccggccgcgctgcccgccgacctgcgctcggtg
ccgatcggccggccgatcaaggacaccgtgctgcgcgtgctgagcccttcgatggccctg
ctgccgaccggcctggtgggcgagctgtgcatcggcgggcacgggctcgcgcgcggctac
ctgcggcaaccccggttgaccgaagaacgcttcgtgcccgatccgttcggcgcgaccggc
gagcgcctctaccgcacgggcgacctcgtgcgctggctgcccgacggcacgctcgaattc
atcggccgccgcgacgggcaggtcaagatccatggccaccggatcgagaccggcgaggtc
gagatggccatcctcgcgcacccggccatccaggcctgcgccgtcgatgcgcggcccgac
gccgatggccagctgcgcctggtggcctaccttgtcgcgcgctcgcacaggctctcctgg
gacgcgctgcgcacgcatctggccacacgcctgcccgcagcgctgctgccctctgcccag
gtctggctcgcgcaacttccggtcacgctcaacggcaagctcgaccgcagggccctgccc
gaaccggcggccgaacgccccgatctcgcgcagccgttcgaggaagcgcgcaacgccgcc
gagcagcgggtgtgcgaagccttcgcccgcgcgctgcacatcgagaaggccgggcgcaac
gacaacttcttcgacctgggcggcgactcgctgcgcgtgctgcaggtgctggcggaactg
cagcgtgacagcgcgcagccgctgtcgaccaatctcttcttccgccatccgacgccgagc
gccatggcggccgagttggaaacggccgccgatgcggcgtccgcgcccgccgccgcgccg
cgcacagcgagcgcacagccgccgctcgccgagaccgaccccaacatgtcggaggccatt
gcgctgatcgccaccgcgggccgctttccaggcgccgcggatgtcgagcagctctgggac
aacctcgtcgccggccgcgacaccatcagcttcttcgacgacgacacgctcgatgccggc
gtgagcgaagccttgcgcaaggacccggcctacgtgcgggcccgcggcgtgatcgaaggc
atcgagaacttcgacgccgccttcttcggcatcggcccgaaggaggccgtgctgatggac
ccgcagcagcgcgtgttcctcgagatctgctgggaatgcctggagcgcgcgggctatgtg
cccgacgccgcaccgggccccgtgggcgtgtatgccggcatgtacaacgccagctacttc
cagcgccatgtcgccacccggcccgacctgatcgaagcggtgggcgagttccaggtgatg
ctggccaacgagaaggactacatcaccacgcgcgtggccaaccggctcaacctgacgggg
ccggcggtgagcatccataccgcctgctcgacctcgctggtggccgtggcccatgccttc
catgcactgcgcaccggccagtgctacatggcgctggccggcggcgcgtccgtcacctgc
ccgccgcgcagcggctacctctaccaggaaggctcgatgctctcgcccgacgggcgcacg
cgcagcttcgacgcgcaggcccagggcactgtcttcagcgacggcgccgcggtggtgctg
ctgaagcgcctggcggacgcgcaggccgacggcgacaccatctatgcggtgctgcgcagc
gcctgcgtcaacaacgacggcggcaccaaggccagcttcaccgcgcccagcgtcgacggc
caggccgccgtgatccgcgcggcgctggcggcggccaacgtggacgcgcgcagcatctcg
tacgtcgaggcgcacggcaccgccacgccgatgggcgacccggtcgaggtcgaggcgctg
acctgcgcctatgccgaacacaccggcgcgctgggctattgcacgctcggttcgctcaag
agcaacgtgggccacatggtgaccgccgcgggagccgccggcctcatcaaggcggcgctc
tcgctgcaccacgaagcgattccgccgaccgctcacttcagcgcgccgaatccggcgatc
gacttcgcgcgcacgcccttctacgtgagcggcagcctgcaggcctggccgcgcacgagc
cagccgcggcgcgccggcgtcagcgccttcggcgtcggcggcaccaacgcgcacatcatc
ctcgaggaagcgcccgcgcggcccgtctcggccagcgccggagggccgcaggtgctgtcg
atctcggcccgctcggaggccgcgctggccgtggccacggagcagctcgccgcgcacctc
gacgcaacgcccggcgtaccgctggccgacgtcgcctacacgctgagcgtcggccgcaag
gcgcatgccttccgccgcgcggtggtggccagcgatgcggccgaagccgtggccgcgctg
cgcgcgagcgacagcccgtggcgcgccagcgggcgcgtcgactcgcgcgcgccgcagccg
gtgctgatgttcccgggccagggcgcgcagtacgccggcatgggaaagatcctgcatgcc
agcgacccggtgttcgcggcagccctcgacacctgcctgaaggctttcggcggcgcggtg
gatttcgacctgcgcgagcgcatgttcggaaccgatccgcaggcgctggtacccactgcc
gtcacgcagcccgccatcttcgccatcgagtacgcgctggcccgccggctgctctcgctg
gggacgcggccgcatgcgctcatcggccacagcgtgggcgagttcgtcgccgccgtgctc
gcaggcgtgatgcggctggaagacgccgcccggctggtggcccgccgcggggcgctcatg
caggcccagcccgcgggcgcgatgctgtcggtgcgcctgggcgcgctcgagctcgcggcc
cggctcggcccgtcgctctcgctcgccgcggacaacggccccacggcctgcgtggtggcg
gggccgttcgacgccattgaagccctgcaggccgagctgcagaaggacgacatcgcaagc
cgccttctgcagacctcgcacgccttccattcctccatgatggatgccgccgtcgcgccc
ttcgaagcgctggtcggcgaagtggcgctgcatccgccgacggtgccgatcttctcgacg
ctcacgggccgcctgctcgaagacgccgaggccaccagcgccgcctactgggcccgccac
ctgcgcagcaccgtccagttctcgcccgccgtgcgcagcgccatggcgcagacggcgcgg
ccgctcttcattgaagtgggcccccgcaacacgctggccacgctggtgcgccagcacggc
gcgctcgaagtgatgccgctgctgcacggcgagccggccgacgaggcccgcacgctgcgg
ctggcgctggcccgcctctggacatgcggcgccgacgtcgagctgtcccggctcgccgtt
cgcaccggcgcacagcgcgtgcgcctgcccacctaccccttcgaacgcaagcgtttctgg
gtcgacatcgcagcgaccgcggcgagcccggccattgcctcgccggtttcgccgccggcc
tcgctgcccgttgccccacccacgcccgcgctcttcgttccaccccccttcttggagtcg
accgtgacagctgcagcgcccccgccacttccttcacctgcttcccctgcgcccaccgag
tccatggacgcacgcctgcgatccctgttcgaggacatctccggcatcgacatgatgcag
gccgaaggacacgccgccttcggcgagctgggcctggattcgctcacgctgacccaggtt
gccacgcagatcaagaagcgcttcaaggtgaacctgagctttcgacagctcatggagaac
taccgcagcttcgacaccctttccgcattcctgcgcgagagcctgccggccgagcccgtg
gttgcggcagcgtctgtatccacggctgcggtcccgctgccggtggcggtgcaggcggcg
gctgcgcagccgccggccgcgttcctgccggtggtgaacgcagcagccacgggcggcgac
atcggcagcgcgccgatcgtgcagctggttgcgcagcagatggaactgatgcggcgccag
ctcgcgctgctgtcgggcgcaggcatggacgcgctcgcggccgcgcccaccatgccgacc
gctgccgcaagcactgcggccgtggcggcgcaaccctccgccgacggacccgccccggcc
agggagccgcagcgctacgacgtcgccaaggccttcggcgccatcgcgcggatccacacc
cagcgcaccgccgagccgagcggccggcagaaggccaggctggcggccttcatgcggcgc
tatgtggagcgcacgcaaaagagcaagcagttcaccgaagccaaccgtccgcacatggcc
gacccccgcgtggtgaacggtttccggccgctgaccaaggagatcacctaccagatcgtc
atcgagcgctcgaagggatcgaagctctgggatctcgacggcaacgagtacgtcgacgcg
ctcaacggcttcggcatgaacatgttcggctggcagccggacttcgtgcaggaagcggtg
cgccgccagctcgacgcaggctacgagatcgggccgcagcatccgctggccgccgatgtc
accggcctcatctgcgaactcacgggctgcgaccgcgcggcgctgtgcaacaccggctcc
gaagcggtgatggccgcgctgcgcatcgcccgcacggtgaccgggcgcagcaccgtggtc
gtgttcaccggctcctaccacggcaccttcgacgaggtgctggtgcgcgccggcaagggc
ggcaagggcctgtcggccgcgccgggcgtgatgagcggcatgttcggcgacatccgcgtg
ctggactacggcacgccggaggcgctggccttcatccgcgagaacgccgacgacctggcc
gccgtgctggccgagccggtgcagagccgccggccggacttccagccgcgcgagttcctg
caggaagtgcgcgccatcaccgagcagagcggcacctgcttcatcttcgacgaagtcatc
acgggctttcgcgtcgggctcggcggcgcccaggaactgttcggcgtgcgcgccgacctg
gccacctacggcaaggtgatcggtggcggctttccggtgggcgtgatcgccggcaagcgg
gccttcatggacgcgctcgacggcggcgcctggcagtacggcgacgactcgatcccgggc
gtcggcgtgacctacttcgccggcaccttcgtgcggcacccgctcgcgctggctgcggcc
aaggcctcgctcacgcacctgaaggaagccggcccgtcgctgcagaccggcctcacgggc
agcaccgccgccatggccgacgagctcaccgcctggtgcctcgaggtgggcgcgcccatc
gcgattcgccagttcgcatcgctctggcgcgtgagctggctcgaggaccacccgctgcag
gacctgctgttcgccatgatgcgcagccgcggcgtgcacatcctggacaacttcccgtgc
ttcctcaccagcgcgcacagcgccgaggacatcgccaccatccagcgcgtcttcaaggag
tcggtggccgagatgcaggaatccggcttcctgccgcgccgcgcgacggtcgtcacgggt
ttcgactaccgcaagcgctgcgaggaagacggctccgtcctcgcccgcgacgtcgacggc
cagcccttctggtacgtgcccgacacctcgagccccaacccccacctcatcaacggaaag
gccgcagcatga
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