Variovorax paradoxus B4: VAPA_1c33760
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Entry
VAPA_1c33760 CDS
T02835
Name
(GenBank) putative hydroxymethylglutaryl-CoA lyase
KO
K01640
hydroxymethylglutaryl-CoA lyase [EC:
4.1.3.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00280
Valine, leucine and isoleucine degradation
vpd00650
Butanoate metabolism
vpd00907
Pinene, camphor and geraniol degradation
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
Module
vpd_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
VAPA_1c33760
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
VAPA_1c33760
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
VAPA_1c33760
Enzymes [BR:
vpd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.4 hydroxymethylglutaryl-CoA lyase
VAPA_1c33760
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Gene cluster
GFIT
Motif
Pfam:
HMGL-like
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
AGU50462
UniProt:
T1XC01
LinkDB
All DBs
Position
1:complement(3563229..3564212)
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AA seq
327 aa
AA seq
DB search
MKEGKGKRLFINEVATRDGFQMESRFIPTDDKIALVDRLGTLGYAKIEVTSFTSAKAIPA
LRDGEEVMQRIVRQPGVVYTALVPNLRGAERALESRIGEFNVVMSVSETHNLSNLRMTRE
QSFAQLAEVIALARQAGVPVNVSLSCVFGCPMEGEVPLAGVLEWIDRFAALQVQGVTLCD
TTGMAFPTQVQALCEAVMARHPGLQWTAHFHNTRGMGLANVLAAVEAGIERLDMSLGGIG
GCPYAPGATGNVATEDVVHMLQCMGYDTGMDLNGLIDAASELEALVQHDLPSQVPRAGHR
LTRHAPPADFNDSAARAHARRAKELNP
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaggcaagggcaagcggctcttcatcaacgaagtggccacgcgcgacggcttc
cagatggagagtcgcttcattcccaccgacgacaagatcgcgttggtcgaccggctgggc
acgctgggctacgccaagatcgaggtgacgtcgttcacctcggccaaggcgattcccgcg
ctgcgcgacggcgaagaagtgatgcagcgcatcgtgcgccagcctggcgtggtctacaca
gcgctggtgccgaacctgcgcggggccgagcgcgcgctggagagccgcatcggcgaattc
aacgtcgtcatgtcggtgagcgagacccacaacctcagcaacctgcgcatgacgcgcgag
cagtccttcgcgcagctggccgaggtcattgcgctggccaggcaggccggtgtgcccgtg
aacgtgtcgctgtcctgcgtcttcggctgcccgatggaaggcgaggtgccgctggccggc
gtgctggaatggatcgaccgcttcgcggcgctgcaggtgcagggcgtcacgctgtgcgac
accacgggcatggcttttcccacgcaggtgcaggccctctgcgaagccgtgatggcaagg
caccccggcctgcaatggacggcgcacttccacaacacgcgcggcatggggctcgcgaac
gtgctggcggcggtcgaggcgggcatcgagcggctcgacatgtcgctgggcggcatcggc
ggctgcccgtacgcgcctggcgctaccggcaacgtcgccaccgaggatgtggtgcacatg
ctgcaatgcatgggctacgacaccggcatggacctgaacggactgatcgatgccgcctcg
gaactcgaagcgctggtgcagcacgacttgccgagccaggtgccgcgcgccggccatcgg
ctcacacggcatgcgccgccggcggatttcaacgacagcgcggcgcgtgcgcatgcgcgc
cgggccaaggagctgaacccatga
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