KEGG   Variovorax paradoxus B4: VAPA_1c34100
Entry
VAPA_1c34100      CDS       T02835                                 
Symbol
gcvP
Name
(GenBank) glycine dehydrogenase
  KO
K00281  glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd00260  Glycine, serine and threonine metabolism
vpd00630  Glyoxylate and dicarboxylate metabolism
vpd00670  One carbon pool by folate
vpd00785  Lipoic acid metabolism
vpd01100  Metabolic pathways
vpd01110  Biosynthesis of secondary metabolites
vpd01200  Carbon metabolism
Module
vpd_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    VAPA_1c34100 (gcvP)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    VAPA_1c34100 (gcvP)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    VAPA_1c34100 (gcvP)
   00670 One carbon pool by folate
    VAPA_1c34100 (gcvP)
Enzymes [BR:vpd01000]
 1. Oxidoreductases
  1.4  Acting on the CH-NH2 group of donors
   1.4.4  With a disulfide as acceptor
    1.4.4.2  glycine dehydrogenase (aminomethyl-transferring)
     VAPA_1c34100 (gcvP)
SSDB
Motif
Pfam: GDC-P GcvP2_C Aminotran_5 Beta_elim_lyase Aminotran_1_2
Other DBs
NCBI-ProteinID: AGU50496
UniProt: T1XDC9
LinkDB
Position
1:3601507..3604413
AA seq 968 aa
MSIPALPSLQQLENAEEFLARHIGIDAADEARMLPVIGSETRAELIDGIVPAAIRRAKPM
RLPAPLTEADALAELKAIAAKNKVFKSFIGQGYYGTHTPGVILRNVLENPAWYTAYTPYQ
AEISQGRMEALLNFQTMVCDLTGMAIANASMLDEATAAAEAMTLAKRSVKSKSNVFLVSG
DCHPQTIEVIRTRAAPLGIEVKVSTVSETLPHLMVSGEFFGVLAQYPATTGHVHDLRPLA
GHAHQCDAAFCVAADLLALTLLAPPGEWDADIVCGTTQRFGMPLCNGGPHAAYLACRDEF
KRSLPGRLVGVSIDTHGQPAYRLALQTREQHIRREKATSNICTAQVLPAVVASMYAVYHG
PDGLTRIAQRVAALTAILAQGLAQMGREPVNATAFDSLTIRTGDDTPKIIERAQAAGVNL
RQRLQQHLGISLDETTTRADIETLWALFVPAGTAMPRFDDLAGTAPRLPEDLRRTSAFLT
HPVFNTHKSETAMLRYIRSLSDKDLALDRSMIPLGSCTMKLNATSEMIPITWPEFANIHP
FAPAEQLVGYAQLDAQLRAWLCEATGYAGISLQPNAGSQGEYAGLLAIRSFHEAKGQGHR
NICLIPSSAHGTNPASAQMVGLQVVVTACDAQGNVDMDDLKRACEKHSDKLAAVMITYPS
THGVFETRVKELCELVHEHGGRVYVDGANMNALVGVAAPGEFGGDVSHLNLHKTFCIPHG
GGGPGVGPVCVVEDLVPYLPGHATAGVASSGVGAVSAAPLGNAAVLPISWMYCRMMGAKG
LQAATETAILSANYISARLKDHYPTLYASPNGHVAHECILDLRPLKDTSGVTAEDVAKRL
IDYGFHAPTLSFPVPGTLMVEPTESEPLAELDRFIDAMIAIRGEIRRVEEGVWPKDDNPL
KHAPHTAASLLGTEWAHPYSRELGAFPLAELKRAKYWPPIGRVDNVYGDRNLFCSCVPVD
AYQETEKA
NT seq 2907 nt   +upstreamnt  +downstreamnt
atgtcgattcccgcccttccctctttgcaacaactggagaacgccgaagagtttctcgcc
cgccacatcggcatcgatgcggcggacgaggcgcgcatgctgccggtgatcggctcggaa
acccgcgccgagctcatcgacggcatcgtgcctgcggccatccgtcgcgccaagccgatg
cggctgccggcgcccctcacggaggcggatgcgctggccgaattgaaggccatcgcggcg
aagaacaaggtcttcaagagcttcatcggccagggctactacggcacgcatacgccgggc
gtcatcctgcgcaacgtgctcgagaaccccgcctggtacaccgcctacacgccctatcag
gccgagatttcgcagggccgcatggaagccctgctcaacttccagaccatggtgtgcgac
ctcacgggcatggccatcgccaatgcgtcgatgctcgacgaagccacggccgcagccgag
gccatgacgctcgccaagcgcagcgtcaaaagcaagagcaacgtgttcctggtgtccggc
gactgccatccgcagaccatcgaggtcatcaggacgcgcgccgcgccgctgggcatcgag
gtcaaggtcagcaccgtgtccgagacgctgccgcacctgatggtgagcggcgagttcttc
ggcgtgctcgcgcagtaccccgccaccaccggccacgtgcacgacctgcgcccgctcgca
ggccatgcgcaccagtgcgacgccgccttctgcgtggccgccgacctgctggcgctgacg
ctgctcgcacctccgggcgaatgggacgccgacatcgtctgcggcacgacgcagcgcttc
ggcatgccgctgtgcaacggcggcccgcacgcggcctacctggcgtgccgcgacgagttc
aagcgctcgctgccgggccgcctggtcggcgtgagcatcgacacccacggccagcccgcc
taccgcctcgcattgcaaacgcgcgaacagcacatccggcgcgaaaaggccacctccaac
atctgcaccgcgcaggtgctgccggctgtggtggccagcatgtacgccgtgtaccacggc
cccgacggcctcacgcgcatcgcgcagcgcgtggccgcgctcacggccatccttgcgcag
ggcctcgcgcaaatgggccgcgagccggtcaacgccacggccttcgattcgctgaccatc
cgcaccggcgacgacacgccgaagatcatcgagcgcgcccaggccgcgggcgtcaacctg
cgccagcggctgcagcagcacctgggtatttcgctcgacgaaaccaccacgcgcgccgac
atcgagacgctctgggccctgttcgtgcccgccggcaccgcgatgccgcgcttcgacgac
ctggccggcaccgcgccgcgcttgcccgaggacctgcgccgcaccagcgcctttctcacg
cacccggtgttcaacacccacaagagcgaaaccgcgatgctgcgctacatccgcagcctg
tcggacaaggacctggcgctcgaccgcagcatgatcccgctcggcagctgcacgatgaag
ctcaacgcgaccagcgagatgatcccgatcacctggcccgagttcgccaacatccatccc
tttgcgccggccgagcagctggtgggctacgcgcagctcgacgcgcagctgcgcgcatgg
ctctgcgaagcgaccggctacgcgggcatcagcctgcagcccaatgcgggctcgcagggc
gagtacgcgggcctgctggcgatccgctccttccacgaagccaagggccaggggcaccgc
aacatctgcctcattccttcgtcggcgcacggcaccaaccccgcaagcgcgcagatggtg
ggcctgcaggtggtggtgacggcctgcgacgcacagggcaacgtcgacatggacgacctg
aagcgcgcctgcgagaagcacagcgacaagctcgcggccgtgatgatcacctacccgagc
acgcacggcgtgttcgaaacccgcgtgaaggagctctgcgaactcgtgcatgaacacggc
ggccgcgtgtacgtcgatggcgccaacatgaatgcgctggtcggcgtggccgcgccgggc
gaattcggcggcgacgtgagccacctgaacctgcacaagaccttctgcattccgcacggc
ggcggcggcccgggcgtgggcccggtgtgcgtggtcgaagacctcgtgccctaccttccg
ggccatgcgacggccggcgtggcatcgagcggtgtcggcgccgtctcggcagcgccgctc
ggcaatgcggccgtgctgccgatcagctggatgtactgccgcatgatgggtgccaagggc
ttgcaggcggcgaccgaaaccgcgatcctgagcgccaactacatcagcgcgcgcctcaag
gaccactaccccacgctgtacgcgagccccaacggccacgtcgcgcacgagtgcatcctc
gacctgcgcccgctcaaggacaccagcggcgtcaccgccgaggacgtggccaagcgcctg
atcgattacggcttccatgcacccacgctgagcttccccgtgcccggcacgctgatggtg
gaacccaccgagagcgagccgctggccgagctcgaccgcttcatcgacgcgatgatcgcg
atccgcggcgagatccgccgcgtcgaggaaggcgtctggccgaaggacgacaacccgctc
aagcacgcgccgcacactgcggccagcctgctcggaacggaatgggcgcatccgtattcg
cgcgaactcggcgcgttcccgctggctgaactcaagcgggccaagtactggccgccgatc
ggccgtgtcgacaacgtgtacggcgaccgcaacctgttctgcagctgcgtgccagtggac
gcgtaccaggaaaccgaaaaggcctga

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