Variovorax paradoxus B4: VAPA_1c38420
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Entry
VAPA_1c38420 CDS
T02835
Name
(GenBank) putative plug domain-containing TonB-dependent receptor
KO
K02014
iron complex outermembrane recepter protein
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c38420
Transporters [BR:
vpd02000
]
Other transporters
Pores ion channels [TC:
1
]
VAPA_1c38420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
Motif
Other DBs
NCBI-ProteinID:
AGU50924
UniProt:
T1XEZ8
LinkDB
All DBs
Position
1:complement(4056032..4058140)
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AA seq
702 aa
AA seq
DB search
MIPNFRRNAIGAAVLSLASLAAMAQAQPQSVPQAQPAEAAAPALPEIAVTGNPLGASELI
APTTTLSGDRLLMRSESTLGETLNNLPGVSSSYFGPNASRPIIRGLDGDRIRILQNGGGA
PDASSLSYDHAVPMDALVTERVEVLRGPSALQYGGSAVGGVVNVIDNRIPSEPINGFGGR
ADLGFSTGNKEKNGGVVLEGGNDRFALHVDAFNRDSKDVSVPIDLECSKPGRPWLARKIC
NSANEAHGGAVGGTLFFDRGWIGASASTYRSTYGTVAEDDVTIGMKSDRQAIEGEWRPGG
FISSIHAKASHTNYRHTEYEGREAGTTFSNMSNDLRIEARHQKIGNFEGLVGFSSESSRF
AADGAEAFAPHSRTRSNALFLYEELGTSWGRLSFGARTEKVRVTSLGYPEDPTVTRFAIG
ERTFNPHSAAVGALVNLTPQWQLTSNLAYTERAPKDYELLANGPHVATAAWEVGNPDLGK
EKSTGFDVGAQWKSGANTARVNAYVTRFRNYIGLTASGRTLDEEGQVVTDPEATDTLAEY
LYSGVRARFTGIEASGNLRLLGTDGFARLADASTLDLEWRGDVVRAKNLDTGEPLPRIAP
FRAGATLAYGNGPWSARFGFDYNAAQRHVPSVGARETDSYTLWNASIAYRMKVQRANLTW
YARLDNITNKLAYSPTSILTTTVYPNAPLPGRSLKVGLRVTF
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgattcccaatttccgtcgcaacgccatcggtgctgccgttctttcgctggcctctttg
gcggccatggcccaggcccagccccaatcggtaccccaggcgcaacccgccgaagcggct
gcgccggccctgccggagatcgccgtcaccggcaatccgctgggcgcgagcgagctgatc
gcacccaccaccacgctctcgggcgacaggctcctgatgcgctccgaatcgacgctcggc
gagacgctcaacaacctgcccggcgtgagcagcagctacttcggccccaatgcgagccgg
ccgatcatccgcggcctggacggcgaccgcatccgcatcctgcagaacggcggcggcgcg
cccgacgcctcgtcgctgagctacgaccatgcggtgccgatggacgcgctggtcaccgaa
cgcgtcgaggtgctgcgcggcccgtccgcactgcagtacggcggcagcgcggtgggcggc
gtggtcaacgtgatcgacaaccgcattccgagcgaaccgatcaacggcttcggcggccgt
gccgacctgggcttttccaccggcaacaaggagaagaacggcggcgtggtgctcgaaggc
ggcaacgaccgcttcgcgctgcacgtcgatgcgttcaaccgcgactccaaggacgtctcg
gtgcccatcgacctggaatgcagcaagcccgggcgtccctggctggcgcgcaagatctgc
aattcggccaacgaggcgcacggcggcgcggtgggcggcacgctgttcttcgaccggggc
tggatcggcgcctcggccagcacctaccgcagcacctacggcacggtggccgaagacgac
gtgaccatcggcatgaagtccgaccgccaggcaatcgaaggcgaatggcgtccgggcggc
ttcatcagcagcatccacgccaaggccagccacaccaactaccgccacaccgagtacgaa
ggccgcgaggccggcaccaccttctcgaacatgagcaacgacctgcgcatcgaagcgcgc
caccagaagatcggcaacttcgaaggcctggtcggtttcagcagcgaaagcagccgcttc
gccgcggacggtgcggaagcctttgcgccgcacagccgcacgcgctccaatgcgctgttc
ctgtacgaggaactcggcacctcctggggtcggctgagctttggcgcgcgcaccgagaaa
gtccgcgtcacttcgctcggctacccggaagatccgacagtgacgcgctttgccatcggc
gaacgcacgttcaatccgcacagcgcggccgtgggcgccctggtcaacctgacgccgcag
tggcagctcacctcgaacctggcctacaccgagcgggcgccgaaggactatgaactgctt
gccaacggcccgcacgtggcaacggccgcctgggaagtcggcaatccggacctcggcaag
gaaaagtcgaccggcttcgacgtcggcgcgcaatggaagtcgggcgccaacacggcccgc
gtcaacgcctacgtcacgcgctttcgcaactacatcggcctgacggcgtcgggccgcacg
ctcgacgaagaaggccaggtggtgaccgatcccgaggcgaccgacacgctggccgagtat
ctctacagcggcgtgcgcgcgcgcttcaccggcatcgaggccagcggcaacctgcgcctg
ctgggcaccgacggtttcgcgcggctggccgacgcctcgacgctcgacctggaatggcgc
ggcgacgtggtgcgtgcgaagaacctcgacaccggcgagcccctgccgcgcatcgcgccg
ttccgcgcgggcgcgacgctggcctacggcaacggtccctggagcgcacgcttcggcttc
gactacaacgcggcgcagcgccatgtgcccagcgtcggcgcgcgcgaaaccgactcctac
acgctctggaatgcctcgatcgcctatcgcatgaaggtgcagcgcgccaacctcacctgg
tatgcgcgcctcgacaacatcacgaacaagctggcctacagcccgacctcgatcctgacg
acgacggtgtatccgaacgcgccgctgccggggcgttcgctgaaggtcgggctgcgcgtg
accttctag
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