| Entry |
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| Name |
(GenBank) putative bifunctional transcriptional regulator, AraC family
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| KO |
| K13529 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] |
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| Organism |
vpd Variovorax paradoxus B4
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:vpd00001]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VAPA_1c38510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:vpd03000]
VAPA_1c38510
03400 DNA repair and recombination proteins [BR:vpd03400]
VAPA_1c38510
Enzymes [BR:vpd01000]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VAPA_1c38510
Transcription factors [BR:vpd03000]
Prokaryotic type
Helix-turn-helix
AraC family
VAPA_1c38510
DNA repair and recombination proteins [BR:vpd03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VAPA_1c38510
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:4065559..4067160
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| AA seq |
533 aa
MPTPHASTEALESDACYLAMKTHDARFDGSFFTAVTSTGIYCRPVCRVKLPRRENCRFFR
HAAQAEAEGFRPCLRCRPELAPRAASWSTEDASRILALQAARLIDEPDAWSEDGPGAAQI
AARLGVSDRHLRRIFEAQFGVSPLQYLQTRRLLAAKQLIADTRLPMTQVALASGFASVRR
FNAAFLEHYGLNPSALRRAGGAEGGAGKAIEVRLGFRPPYDVGAMLGFFARRALRGIEVA
TTADGKEPAKGSTPAFVRLARTLSVQQGGQAHTGWLQLRFDMEREQMLLSVSDSLAAVLP
IVISRARAMLDLDAEPMAINAALHEAFPHGDGLRVPGTVDGFELAVRAVLGQQITVAAAR
TLGSRLVEAFGETVATPIEGLNRLFPTPAALAAASGDALGKLGIVRQRQAALQAIAREVA
CGKLALHAGADVPSIIAALQELPGIGAWTAQYIAMRALRWPDAFPAGDVALQKALGVTTE
RAASQASQAWRPWRSYAVLRAWHAPSSSPAAAAAAFLAAAEPFNNLATAGASA |
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| NT seq |
1602 nt +upstreamnt +downstreamnt
atgcctacccctcacgcatccaccgaagcactcgagagcgacgcctgctacctggcaatg
aagacgcatgacgcgcgcttcgacggctcgttcttcaccgcggtgacctccaccggcatc
tactgccggccggtctgccgcgtgaagctgccgcggcgcgagaactgccggttcttccgc
cacgcggcgcaggccgaggccgagggcttccgcccctgcctgcggtgcaggcccgagctc
gcgccgcgggcggcgagctggtccaccgaagatgcctcgcgcattctcgcgctgcaggcc
gcgcggctcatcgacgagcccgacgcgtggtccgaggacgggccgggcgcggcgcaaatc
gccgcacggctcggcgtgagcgaccgccatctgcggcgcatcttcgaggcgcagttcggc
gtctccccgttgcaatatctgcagacgcgccgcctgctggccgccaagcagttgatcgcc
gacacgcggctgccgatgacgcaggtcgccctggccagcggcttcgcgagcgtgcgccgc
ttcaacgccgcgttcctggagcactacggcctcaacccgagcgcgctgcggcgcgccggc
ggcgccgagggcggcgcgggaaaggccatcgaggtgcggctgggctttcgcccgccctac
gacgtgggcgcgatgctcggcttctttgcgcggcgcgcgctgcgcggcatcgaggtggcc
accacggccgatggcaaggaacccgccaagggcagcacaccggctttcgttcgcctggcc
cgcacgctgagcgtgcaacaaggcgggcaggcccataccggctggttgcaactgcgcttc
gacatggagcgcgagcagatgctgctgtcggtcagcgactcgctcgccgcggtgctgccg
atcgtgatcagccgcgcacgcgccatgctcgacctcgatgccgagccgatggccatcaac
gccgcgctgcacgaggccttcccgcacggcgacggcttgcgcgtgcccggcacggtcgat
ggtttcgagctggcggtgcgcgcggtgctcggccagcagatcaccgtggccgcggcgcgc
acgctgggttcgcggctggtcgaggctttcggcgaaactgtcgccacgcccatcgaaggc
ctgaaccgcctgtttcccacgcccgcggcactggcggccgcaagcggcgatgcactcggc
aagcttggcatcgtgcgccagcgccaggcggccctgcaggccatcgcccgcgaggtcgcc
tgcggcaagctggcgctgcatgcgggcgccgacgtgccctcgatcattgccgcgctgcag
gagctccccggcatcggcgcctggaccgcgcagtacatcgcgatgcgcgcgctgcgctgg
cccgacgccttccccgcaggggatgtcgcgctgcagaaagcactgggcgtgaccaccgag
cgcgcggccagccaggcgtcgcaggcatggcgcccctggcgcagctatgcggtgctgcgc
gcctggcatgcgccgtcctcctctcccgctgccgccgcagcagccttcttggcggcggca
gagcctttcaacaacctcgcaacggcaggcgcctccgcctga |
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