Variovorax paradoxus B4: VAPA_1c39660
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Entry
VAPA_1c39660 CDS
T02835
Name
(GenBank) putative peptide ABC transporter, ATP-binding protein
KO
K02031
peptide/nickel transport system ATP-binding protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VAPA_1c39660
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c39660
Transporters [BR:
vpd02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
VAPA_1c39660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
oligo_HPY
AAA_21
SMC_N
AAA_22
AAA_25
AAA_16
AAA
AAA_5
Mg_chelatase
ABC_ATPase
Motif
Other DBs
NCBI-ProteinID:
AGU51044
UniProt:
T1XFD7
LinkDB
All DBs
Position
1:4207021..4208073
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AA seq
350 aa
AA seq
DB search
MSGNPLLRVQDLHVEFKTRRGQALVLNGVDFEIRSGETLCVVGESGCGKSMTALALLRLI
PSPPGRISGGRVMFQGEDLVQATDARMREVRGNRISMIFQEPMTSLNPVFTVGDQIGESL
RLHAGMNAQAARERAIEMLRQVGIPAPERRVDEYPHQLSGGMRQRVMIAMALACRPDILI
ADEPTTALDVTVQAQIFDLLRELQREKGTAIMLITHDMGAVAEMADRVMVMYAGRVIEQG
STEQVLSQPGHPYTRGLIDCLPELGSSAAFGDGARPELAEIAGVVPSIWELGRGCAFRER
CPHAMARCAAEAPPMFALEGPAEGEGTGAPHGAACWLHVEAPQARMKEAA
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaacccactgctgcgcgtgcaggacctgcacgtcgaattcaagacccgccgc
ggccaggcgctggtgctcaatggcgtcgacttcgagatccgcagcggcgagacgctgtgc
gtggtcggcgaatcgggctgcggcaagagcatgacggcgctcgcgctgctgcggctcatt
ccctcgccgccgggccgcatcagcggcggacgcgtgatgttccagggcgaagacctggtg
caggccaccgacgcacgcatgcgcgaggtgcgcggcaaccgcatctcgatgatcttccag
gagccgatgacctcgctcaatccggtgttcaccgtgggcgaccagatcggcgaatcgctg
cgtctgcatgcgggcatgaacgcccaggcggcccgcgagcgtgccatcgagatgctgcgg
caggtgggcattccggcgccggagcggcgcgtcgacgaatatccgcaccagctctcgggc
ggcatgcgccagcgcgtgatgattgccatggcgctggcctgccggcccgacatactgatt
gccgacgagcccaccacggcgctggacgtgacggtgcaggcccagatcttcgacctgctg
cgcgagctgcagcgcgagaagggcacggccatcatgctcatcacgcacgacatgggcgcg
gtcgccgaaatggccgaccgcgtgatggtgatgtatgcgggccgcgtgatcgaacagggc
agcaccgaacaggtgctttcgcagccgggccatccctacacgcgcggcctgatcgattgc
ctgcccgaactcggcagcagcgcggccttcggcgacggcgcgcggccggaactggccgag
atcgcaggcgtggtgccgtcgatctgggagctgggccggggctgcgcgtttcgcgagcgc
tgcccgcatgcgatggcgcgctgcgccgcagaggcgccgccaatgttcgcgctcgaaggc
cctgcagaaggcgaaggcacgggcgcgccgcacggcgccgcctgctggctgcatgtcgag
gcgccgcaggcgcgcatgaaggaggccgcatga
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