Variovorax paradoxus B4: VAPA_1c42240
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Entry
VAPA_1c42240 CDS
T02835
Name
(GenBank) formate dehydrogenase, subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00630
Glyoxylate and dicarboxylate metabolism
vpd00680
Methane metabolism
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VAPA_1c42240
09102 Energy metabolism
00680 Methane metabolism
VAPA_1c42240
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
VAPA_1c42240
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GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
Molybdop_Fe4S4
Fer4_7
Fer4_21
Fer4_6
Fer4_9
Fer4
Fer4_10
Fer4_8
Fer4_16
Fer4_2
Fer4_4
Fer4_18
Fer4_17
CDC48_N
Motif
Other DBs
NCBI-ProteinID:
AGU51300
UniProt:
T1XGP0
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All DBs
Position
1:complement(4486724..4489597)
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AA seq
957 aa
AA seq
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MNAPSKLAELMPQTIEFTLDGQPIQAFDGETIFKAAERHGVDIPHLCFKDGYRPDGNCRA
CVVEVKGERTLAPSCCRNVTAGMEVQATSERALKSQKMVVEMLLSDMPDEGYKWIGDDAT
QQHGELSAWAKKLDIAARPELKALRRKQPKADISHPAMAVNLDACIQCNRCVRACREEQV
NDVIGYALRGGDSKIVFDLDDPMGDSTCVACGECVQACPTGALMPKSHIGSQQVDRKVDS
VCPFCGVGCLVTYNVKDEKIVSVDGRDGPANHNRLCVKGRFGFDYAHHPQRLTRPLIRKA
GMPKDFGDAPRPGDWGEVFREATWEEALALTSGKLSGLRDTYGAKSLAGFGSAKGSNEEA
YLFQKLVRTGFGSNNIDHCTRLCHASSVAALLEGVGSGAVSNQVNDVEHAGLIFVIGSNP
TANHPVAATWMKNAAQRGAKIVLADPRRTDISRHAWRTLQFKADTDVAMLNALIHAVIDE
GLVDQEFVRTRASNYEALRENVKGYSPEAMAPICGVPAETLREVARAFASAKGAMILWGM
GISQHVHGTDNARCLIALATVTGQIGKPGSGLHPLRGQNNVQGASDAGLIPMMFPNYQRV
DNPAVHAWFENFWGTPLDATPGYTVVEIMHKALAPDSDPHKVRGMYIMGENPAMSDPDLN
HARHALASLEHLVVQDIFMTETAWLADVVLPASAWPEKTGTVSNTDRMVQLGKRALNPPG
DARPDLWIIQQIARGMGLHWNYEGEESGVAAVYEEMRQAMHAVISGISWERLQRDSSVTY
PCLSEDDPGQPTVFIDDFPTADGRVKLVPADIIPADERPDAEYPFVLITGRQLEHWHTGS
MTRRASVLDALEPMATASMNQSDLQKLGLEAGDVITVQSRRGEVAIHVRRDDGTPSGAVF
VPFAYYEAAANLMTNAALDPLGKIPEFKYCAVSIRRGGQPMAAAGYGTGSGVLAAVD
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccccgtccaagctcgcggagctgatgccgcaaaccatcgaattcaccctcgac
gggcaacccatccaggccttcgacggcgagaccatcttcaaggcggccgagcgtcacggc
gtcgacattccccacctgtgcttcaaggacggctaccgccccgacggcaactgccgcgcc
tgcgtggtcgaggtgaagggcgaacgcacgctcgctcccagctgctgccgcaacgtgacg
gccggcatggaggtgcaggccaccagcgagcgggctctcaagagccagaagatggtggtc
gagatgctgctgtccgacatgcccgacgagggctacaagtggatcggcgacgacgccacc
cagcagcacggcgaactcagcgcctgggcgaagaagctcgacatcgcggcgcggcccgaa
ctcaaggcgctgcgccgcaagcagccgaaggccgacatctcgcatcctgcgatggccgtc
aacctcgatgcctgcatccagtgcaaccgctgcgtgcgcgcctgccgcgaggagcaggtc
aacgacgtcatcggatacgctctgcgcggtggcgacagcaagatcgtgttcgacctcgac
gacccgatgggcgacagcacctgcgtggcctgcggcgaatgcgtgcaggcctgcccgacc
ggcgcgctgatgcccaagagccacatcggctcgcagcaggtcgaccgcaaggtcgattcg
gtgtgcccgttctgcggcgtgggctgtctcgtgacctacaacgtgaaggatgagaagatc
gtcagcgtcgacggccgcgacggcccggccaaccacaaccgcctgtgcgtgaagggccgc
ttcggcttcgactacgcgcaccacccgcagcgcctgaccaggccgctgatccgcaaggcc
ggcatgccgaaggacttcggcgatgcgccgcggcccggcgactggggcgaggtcttccgc
gaagccacctgggaagaagcgctcgcgctcaccagcggcaagctctcgggcctgcgcgac
acctacggcgccaagtcgctcgcgggcttcggctcggccaagggcagcaacgaagaggcc
tacctgttccagaagctcgtgcgcacgggtttcggcagcaacaacatcgaccactgcacg
cggctgtgccacgcctccagcgtggcggcgctgctcgaaggcgtgggctcgggcgcggtg
agcaaccaggtcaacgacgtggagcatgcggggctgatcttcgtcatcggctccaacccc
acggccaaccacccggtggccgccacctggatgaaaaacgccgcccagcgcggcgccaag
atcgtgctggccgacccgcgccgcaccgacatcagccgccatgcctggcgcacgctgcag
ttcaaggccgacaccgacgtggccatgctcaacgcgctgatccacgcggtgatcgacgaa
ggcctggtcgaccaggagttcgtgcgcacgcgcgccagcaactacgaggcgctgcgcgag
aacgtcaagggctacagccccgaggcgatggcacccatctgcggcgtgccggcggaaacg
ctgcgcgaagtggcacgcgcctttgccagcgccaagggcgcgatgatcctctggggcatg
ggcatcagccagcacgtgcacggcaccgacaacgcgcgctgcctcatcgcgctggccacc
gtcaccgggcagatcggcaagccgggctcgggcctgcatccgctgcgcggccagaacaac
gtgcagggtgcgagcgacgcgggcctgatcccgatgatgtttcccaactaccagcgcgtc
gacaacccggcggtgcacgcgtggttcgagaacttctggggcacgccgctcgatgcgaca
ccgggctacaccgtggtcgagatcatgcacaaggcactggcgcccgacagcgatccgcac
aaggtgcgcggcatgtacatcatgggcgagaacccggctatgagcgaccccgacctgaac
catgcgcgccatgcgctcgcgagcctcgagcacctggtggtgcaggacatcttcatgacc
gagaccgcgtggctcgccgacgtggtgctgcccgcgagcgcctggcccgagaagaccggc
acggtgagcaacaccgaccgcatggtgcagctgggcaagcgcgcgctcaatccgccgggc
gacgcgcggcccgatctctggatcatccagcagatcgcccggggcatgggcctgcactgg
aactacgagggcgaggagtccggcgtggccgcggtctacgaggaaatgcgccaggccatg
catgcggtgatcagcggcatcagctgggagcggctgcagcgcgattcgagcgtgacctac
ccctgcctgagcgaggacgacccgggccagccgaccgtgttcatcgacgacttcccgacc
gccgacggtcgcgtgaagctggtgcccgccgacatcattccggcggacgagcggcccgat
gccgagtacccgttcgtgctgatcaccggtcgccagctcgagcactggcataccggcagc
atgacgcgccgcgcctccgtgctcgatgcgctggagccgatggccaccgcctcgatgaac
cagtccgacctgcagaagctcggcctcgaagccggcgacgtgatcaccgtgcagtcgcgc
cgcggcgaggtggccatccacgtgcggcgcgacgacggtacgcccagcggcgcggtgttc
gttcccttcgcctactacgaggccgcggccaacctgatgaccaatgccgcgctcgatccg
ctcggcaagattccggagttcaagtactgcgcggtgagcatccggcgcggcggccagccg
atggcggcggccggttacggaaccgggtcgggcgtgctcgcggcggtggactga
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