Variovorax paradoxus B4: VAPA_1c42770
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Entry
VAPA_1c42770 CDS
T02835
Symbol
aspS
Name
(GenBank) aspartate--tRNA ligase AspS
KO
K01876
aspartyl-tRNA synthetase [EC:
6.1.1.12
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
VAPA_1c42770 (aspS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vpd01007
]
VAPA_1c42770 (aspS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c42770 (aspS)
03029 Mitochondrial biogenesis [BR:
vpd03029
]
VAPA_1c42770 (aspS)
Enzymes [BR:
vpd01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.12 aspartate---tRNA ligase
VAPA_1c42770 (aspS)
Amino acid related enzymes [BR:
vpd01007
]
Aminoacyl-tRNA synthetase
Class II (A)
VAPA_1c42770 (aspS)
Transfer RNA biogenesis [BR:
vpd03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
VAPA_1c42770 (aspS)
Prokaryotic type
Other AARSs
VAPA_1c42770 (aspS)
Mitochondrial biogenesis [BR:
vpd03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
VAPA_1c42770 (aspS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
GAD
tRNA_anti-codon
tRNA-synt_2b
Motif
Other DBs
NCBI-ProteinID:
AGU51353
UniProt:
T1XFK7
LinkDB
All DBs
Position
1:complement(4534097..4535902)
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AA seq
601 aa
AA seq
DB search
MAMRTHYCGLVTDALMGQTVTLCGWVNRRRDHGGVIFIDVRDREGYVQVVCDPDRAATFA
VAENLRNEFCVQVTGLVRARPEGTTNDQLKSGKIEVLCHELKVLNPSVTPPFLLDDDNLS
ETTRLTHRVLDLRRPAMQRNMMLRYKVTMETRKFLDANGFIDIETPMLGKSTPEGARDYL
VPSRVHDGSFFALPQSPQLFKQLLMVAGYDRYYQIVKCFRDEDLRADRQPEFTQIDIETS
FLAEEEIREMFEGMIRTVFRNAAGIDLPVFPTMSYADAMFKYGSDKPDLRVKLEFTELTE
LMKRVEFKVFSNAATMTGGRVVALRVPGGGAEGGLSRGEIDAYQEFVKIYGAKGLAYIKV
NDAAAGREGLQSPIVKNLDDASLAEIIARTGARNGDILFFGADKEKVVNDAIGALRVKIG
HSAFGKKSGLFDDRWAPLWVVDFPMFEFDEEGQRWSAVHHPFTAPKDGHEDLMDTAPEKC
IAKAYDMVLNGIEMGGGSVRIHREEVQSKVFRALKISAEDAQLKFGFLLDALQYGAPPHG
GIAIGLDRLVMLMTGAESIRDVIAFPKTQRAQDLLTQAPSPVDEKQLRELHIRLRNVQQP
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggccatgcgtactcactattgcggtcttgtgaccgatgccctgatgggccaaaccgtc
accctgtgcggctgggtcaaccgccgccgcgaccatggcggcgtgatcttcatcgacgtg
cgcgaccgcgaaggctacgtgcaggtggtgtgcgaccccgatcgggccgccacctttgcc
gtggccgagaacctgcgcaacgaattctgcgtgcaggtcaccggcctggtgcgcgcgcgc
cccgaaggcaccacgaacgaccagctcaagagcggcaagatcgaagtgctgtgccatgag
ctcaaggtgctgaacccgtcggtcacgccgccgttcctgctggacgacgacaacctgtcg
gaaaccacgcgcctcacgcaccgcgtgctcgacctgcgccgcccggccatgcagcgcaac
atgatgctgcgctacaaggtgacgatggaaacgcgcaagttcctcgatgccaacggcttc
atcgacatcgaaaccccgatgctcggcaagtccacgcccgaaggcgcgcgcgactacctc
gtgcccagccgcgtgcacgacggcagcttcttcgcgctgccgcagtcgccccagctcttc
aagcagctcctgatggtggccggctacgaccgctactaccagatcgtgaagtgcttccgc
gacgaagacctgcgcgccgaccgccagcccgaattcacgcagatcgacatcgagacctct
ttcctcgccgaagaagaaatccgcgagatgttcgaaggcatgatccgcaccgtgttccgc
aacgccgcgggcatcgacctgccggtgttcccgaccatgagctacgccgacgcgatgttc
aagtacggctcggacaagcccgacctgcgcgtgaagctcgaattcaccgagctcaccgaa
ctcatgaagcgcgtcgagttcaaggtgttctcgaatgcggccaccatgaccggcggccgc
gtggtcgcgctgcgtgtgccgggcggcggcgccgagggcggcctctcccgcggcgagatc
gacgcctaccaggagttcgtcaagatctacggcgccaagggcctggcctacatcaaggtc
aacgacgccgcagcgggccgcgaaggcctgcagagccccatcgtcaagaacctcgacgac
gcttcgctggccgagatcatcgcccgcaccggtgcccgcaacggcgacatcctgttcttc
ggtgccgacaaggaaaaggtcgtcaacgacgccatcggcgcgctgcgcgtgaagatcggc
cacagcgccttcggcaagaagagcggcctgttcgacgaccgttgggcgccgctgtgggtg
gtcgacttcccgatgttcgagttcgacgaggaaggccagcgctggagcgccgtgcaccat
ccgttcaccgcgccgaaggacggccatgaagacctcatggacaccgcgcccgagaagtgc
attgccaaggcctacgacatggtgctcaacggtatcgagatgggcggcggctcggtgcgt
attcaccgcgaggaagtgcagagcaaggtgttccgcgcgctcaagatcagcgccgaggac
gcgcagctcaagttcggcttcctgctcgacgcgctgcagtacggcgccccgccgcacggt
ggcatcgccattggcctggaccgcctggtcatgctcatgaccggcgccgagtcgatccgc
gacgtgatcgccttccccaagacccagcgggcgcaggacctgctcacgcaggcgccgagc
ccggtcgacgagaagcagctgcgcgagctgcacatccggctgcgcaacgtccagcaaccc
gcctga
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