Variovorax paradoxus B4: VAPA_1c45100
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Entry
VAPA_1c45100 CDS
T02835
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase MutM
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VAPA_1c45100 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c45100 (mutM)
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VAPA_1c45100 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VAPA_1c45100 (mutM)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VAPA_1c45100 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
NFACT_N
SGNH
C1_2
RNHCP
Motif
Other DBs
NCBI-ProteinID:
AGU51580
UniProt:
T1XHJ8
LinkDB
All DBs
Position
1:complement(4760352..4761164)
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AA seq
270 aa
AA seq
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MPELPEVEVTRRGFAERIAGARIDAVRIGKPLRWALMVAPETLVGRRVLQVRRRGKYLLI
DLDRGLLLLHLGMSGSLRFDALLPPPGVHDHFDLVTELGTLRLNDPRRFGAVVYVEDEAA
PWAVKLLGGLGMEPLGDAFDLDAFHAGLRKRRTAVKQVLLAGDVVVGVGNIYASEALFQA
GIRPTLSAARISRPRAARLHAAVREILARAVEKGGSTLRDFSNVDGQNGYFQLEATVYGR
AGEPCRVCATPIRQLRQGQRSTYYCPNCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttcccgaagtcgaagtgacgcggcgcggttttgccgaacgcattgccggt
gcacgcatcgatgcggttcgcatcggcaaaccgttgcggtgggcgctgatggtcgcgccc
gagacgctggtcggtcgccgggtgctgcaggtgcggcggcgcggaaagtacctgctgatc
gacctcgatcgcggcctgctgctgctgcacctgggcatgtcgggcagcctgcgcttcgat
gcgttgcttcccccgccgggcgttcacgatcatttcgatctcgtgaccgaactcggtacg
ctgcggctgaacgatccgcgccgcttcggcgccgtggtctacgtggaggacgaggccgcg
ccgtgggccgtcaagctgctcggcggcctggggatggagccgctgggcgatgccttcgat
ctggatgcgtttcacgccggccttcgcaagcgccggacggcggtgaagcaggtgctgctc
gcgggcgacgtggtggtgggggtgggaaacatctacgcgtcggaggcgctgttccaggcg
ggcatccgacccacgctttcggccgcgcgcatcagccggccgagggcggccaggcttcat
gcggccgtgcgcgaaatccttgcaagggcggtcgagaagggcggcagcacgctgcgcgac
ttttccaacgtggacgggcagaacggctatttccagctcgaagccacggtctacggccgg
gctggcgaaccctgtcgggtctgcgcaacgccgatccggcaactgcgccaagggcagcgt
tccacttactattgcccgaattgtcaaaaatag
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