Variovorax paradoxus B4: VAPA_1c45440
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Entry
VAPA_1c45440 CDS
T02835
Name
(GenBank) transcriptional regulator, LysR family
KO
K05596
LysR family transcriptional regulator, chromosome initiation inhibitor
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpd03000
]
VAPA_1c45440
03036 Chromosome and associated proteins [BR:
vpd03036
]
VAPA_1c45440
Transcription factors [BR:
vpd03000
]
Prokaryotic type
Helix-turn-helix
LysR family
VAPA_1c45440
Chromosome and associated proteins [BR:
vpd03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
VAPA_1c45440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
P22_Cro
HTH_AsnC-type
MarR_2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AGU51612
UniProt:
T1XFC5
LinkDB
All DBs
Position
1:4790687..4791604
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AA seq
305 aa
AA seq
DB search
MLDYAALNALAAVVREGSFERAARALNVTPSAVSQRVKLLEERTGGALLVRGQPCVATEA
GQQLCRHIERVGMLEHELREALPALGMGGRNGEGAERVTVRVAVNADSLATWFMAAAAAF
AKQEASALLDLTVDDQDHTAERLRSGAVLAAVTALAHPVAGCNSEALGSMHYVAAASPEF
VDRYFARGVGARTLAHAPSLVFDRKDRLQARWVRRICHRSIETPRHWLPSAQGFVEAARA
GMGWGMLPASMAADAMRTGALVELVPGSVLQVPLYWQQARAAPQLLERLKAAVRAAAGSG
AHALR
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgctcgactacgccgccctgaatgcattggccgccgtggtgcgggagggcagcttcgag
cgcgcggcccgcgctctgaacgtcacgccgtcggccgtctcccagcgcgtgaagctgctc
gaggagcgcacgggcggcgcgctgctggtgcgcggccagccttgcgtggcgacggaagcc
gggcagcagctctgccggcacatcgagcgcgtgggcatgctggagcacgagctgcgcgag
gcgctgcccgcgctcggcatgggcggcaggaatggcgagggggccgagcgcgtcacggtg
cgggtggcggtgaacgccgacagcctggccacctggttcatggccgccgccgcggccttt
gcaaagcaggaagcatccgccctgctcgacctgaccgtggacgaccaggaccacaccgcc
gagcgcctgcgaagcggcgcggtgctggcggccgtcacagcgctggcgcacccggtggcc
ggctgcaacagcgaggcgctgggcagcatgcactacgtggccgccgcgagcccggagttc
gtcgatcggtatttcgccaggggagtgggcgcgcgcaccttggcccatgcgccgagcctg
gtgttcgaccgcaaggaccggctgcaggcacgctgggtgcggcgcatctgccatcgcagc
atcgagacaccgcggcactggctgccctcggcccagggtttcgtcgaagcggcgcgcgcc
ggcatgggctgggggatgcttccggccagcatggcggccgacgcgatgcgcacgggcgca
ctggtggaactggtgcccggctcggtgctgcaggtgccgctctactggcagcaggcgcgc
gcggcgccgcaattgctcgaacgcctcaaggcggcggtgcgcgcagccgccggaagcggc
gcgcacgccctgcgttga
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