Variovorax paradoxus B4: VAPA_1c46330
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Entry
VAPA_1c46330 CDS
T02835
Name
(GenBank) putative type I secretion system ATPase, HlyB family
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
VAPA_1c46330
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c46330
02044 Secretion system [BR:
vpd02044
]
VAPA_1c46330
Transporters [BR:
vpd02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
VAPA_1c46330
Secretion system [BR:
vpd02044
]
Type I secretion system
Adhesin protein transporter
VAPA_1c46330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_23
AAA_29
AAA_15
AAA_27
AAA_16
AAA_22
AAA_25
RsgA_GTPase
AAA_13
Motif
Other DBs
NCBI-ProteinID:
AGU51701
UniProt:
T1XGR3
LinkDB
All DBs
Position
1:complement(4875524..4877368)
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AA seq
614 aa
AA seq
DB search
MIKFLLPSQLVAEVPEESGASPYAGALHTAFRAAYPLVKSAAWRSLPISLFGLLPSIFLL
QVYDRVLSRSGVSTLAALVCGILFFLCIEFWLRTGRSRLLRNAGAIIDHGVSGALLHSML
NRPLRALEARPASMWHQFFRDVASVRGTVTGGLAQSIFDLPMAVFALAVIGIVALPVLPV
VVLFLAIMVFLAWWWADEVRSGRVEEVQRGRGLDRMTSEICNARETLKTQSNDGPTIEMW
RQTYNAWLSESFSKNGQIETARDGTTVLMMVFSVIVVTVGAISVMEQWMTVGGLVASNML
ALKALQPVAGLVSSWRSLAAAKEAAKRLEKVLGEPVEKAPTGMTLPQPLGRVTLKDVSFS
FTEDAHRPVLENVDLDIGPGGLHVIVGRNGAGKSTLVKLLSGLYTPTRGVISIGEYDLSQ
FGREELSRWISYLSQEVYWFGGPLIDTMRRTAPGQTDEQVVAACKLSGAHDFISRMPDGY
RTVVGEGGTGLSVGERRKLALAMSFLRKPSVLVLDEPSNDLDFQSERTLLATLLAVAKVR
TVVVVTHSLRIVSAASVVYHVTGQGNVEQGTAAVMVPKLFGVKKALVALPDSTAGDDDAE
AHSQQGVAANRSMA
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtttctcttgcccagccaactggtggccgaggtgcccgaagaatcaggtgcg
agcccgtacgcgggtgccctgcacactgcgttccgggccgcctatcccctggtcaagagc
gcggcctggcgttcgctgcccatcagcctctttggcctgctgccgtcgatcttcctgctc
caggtgtacgaccgcgtgctgtcgcgaagcggcgtctccacgctggccgcgctggtgtgc
ggcatcctgttcttcctctgcatcgagttctggctgcgcacggggcgctcgcgcctgctg
cgcaatgcgggcgccatcattgaccacggcgtgtcgggtgcgctgctgcattcgatgctg
aaccgcccgctgcgcgcgctcgaggcgcgcccggcctcgatgtggcaccagttcttccgc
gacgtggcctcggtgcgcggcaccgtcacgggcggcctggcgcaatcgatcttcgatctg
ccgatggcggtctttgcactggccgtgatcggcatcgtggccttgccggtcctgccggtg
gtggtgctgttccttgccatcatggtcttccttgcctggtggtgggccgacgaggtgcgc
agcgggcgggtcgaggaagtgcagcgcggccgtggcctcgaccgcatgacctcggaaatc
tgcaacgcgcgcgaaacgctcaagacgcagtcgaacgacggccccaccatcgagatgtgg
cgccagacctacaacgcctggctgagcgaaagcttcagcaagaacgggcagatcgaaacc
gcgcgcgacggcaccaccgtgctgatgatggtcttctcggtcatcgtggtcacggtgggc
gccatttcggtgatggagcaatggatgacggtgggcggcctggtcgcctccaacatgctg
gccctcaaggcgctgcagccggtggccggcctggtctcgagctggcgttcgctggctgcc
gccaaggaagcggcgaagcggctcgagaaggtgctcggcgagccggtcgaaaaagcgccc
acgggcatgacgctgccgcagccgctgggccgtgtcacgctgaaggacgtgagcttcagc
ttcacggaagacgcgcacaggccggtgctcgagaacgtcgacctcgacatcgggccgggc
ggcctgcacgtgatcgtcgggcgcaacggcgccggcaagtcgacgctggtcaagctgctc
tcgggcctgtacacgcccacgcgcggcgtcatcagcatcggcgagtacgacctctcgcag
ttcggccgcgaagagctctcgcgctggatcagctatctctcgcaggaggtctactggttc
ggcggcccgctgatcgacaccatgcgccgcacggccccgggccagaccgacgagcaggtg
gtggcggcctgcaagctctcgggcgcgcacgacttcatctcgcgcatgcccgacggctac
cgcaccgtggtgggcgagggcggcaccggcctttcggtgggcgagcggcgcaagctcgcg
ctggccatgagcttcctgcgcaagccctcggtgctggtgctcgacgagcccagcaacgac
ctcgacttccagagcgagcgcacgctgcttgccacgctgctcgcggtggccaaggtgcgc
accgtggtggtggtcacgcattcgctgcgcatcgtgtcggcggccagcgtggtctatcac
gtgacggggcagggcaatgtcgagcagggaacagccgccgtcatggtgccgaagctcttc
ggcgtgaagaaggcactggtggcgctccccgattccaccgcgggcgacgacgatgccgag
gcgcattcgcagcagggtgtcgccgccaaccgttccatggcttga
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