Variovorax paradoxus B4: VAPA_1c47100
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Entry
VAPA_1c47100 CDS
T02835
Name
(GenBank) putative outer membrane adhesin-like protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VAPA_1c47100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_4
Cadherin_5
Cadherin
BapA_N
CshA_repeat
Cadherin_CELSR2_9th
VWA_2
Big_6
VWA
K319L-like_PKD
Cadherin_3
VWA_CoxE
Motif
Other DBs
NCBI-ProteinID:
AGU51777
UniProt:
T1XFT1
LinkDB
All DBs
Position
1:complement(4955129..4960738)
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AA seq
1869 aa
AA seq
DB search
MEAVYKSGGASRKAAADAPLVLDRPSIVSLKIAPESVLRFERRGGDLVLVLQGGQEVAVR
GFFAEYPDGGRNDLVLEDGAGVQWWGQYTAPWKDFHFTEIEWNDAGAALLPDGVPGWLLG
ALGVLGVGAAASGGGGGGGGGPAFIPPLLPPQNRGPEGKAEPVATEQDKPISGQVQATDP
DRDTLNFTVAKGPEHGTVTVDPSTGQFLYTPNPGYEGPDSFEVTVSDGRGGTTTVTVPVT
VSPVNDAPTAPDYTETTNEDTPVSGRVTGSDMDSGDTLTYVKGSDPAHGTVTVNPDGTYT
YTPGANFNGTDSFTVTVSDGHGGTTTSTVTVTINPVNDVPVFVDGGGTPVNTTDGYVFGY
DENRPAGTVLGTVRATDVDSATVTYSILSGNDDGYFAIDPVTGAISLTPAGAAAFVNDYE
AGANAHALVVGASDGTVTTNIPVTLNEQNINDAPTAPDDTKTTDEDTPVSGQIIGSDADG
DTLTYTKGSDPAHGMVTVNADGTYTYTPGANFNGTDSFTVTVSDGHGGTTTSTVNVTVNP
VNDLPTVPDYTKTTPEDTPVSGQVIGTDVDGDTLTYVKGSDPAHGTVTVNADGTYTYTPG
ANFNGTDSFTVTVSDGHGGTTTSTVNVTVNPVNDAPVFVDGGGTPVNTTDGYVFGYDENR
PAGTVLGTVRATDVDSATVTYSILSGNDDGYFAIDPVTGEISLTPAGAAAFVNDYEAGAN
AHALVVGANDGTVTTNIPVTLNEQNINDAPKAPDDTKTTNEDTPVSGQIIGSDADGDTLT
YVKGSDPSHGTVTVNADGTYTYTPGANFNGTDSFTVTVSDGHGGTTTSTVTVTINPVNDV
PVFVDGGGTPVNTTDGYVFGYDENRPAGTVLGTVRATDVDSATVTYSILSGNDDGYFAID
PVTGAISLTPAGAAAFVNDYEAGANAHALVVGASDGTVTTNIPVTLNEQNINDAPTAPDD
TKTTDEDTPVSGQIVGSDVDGDTLTYVKGTDPSHGTVTVNADGTYTYVPGPNFNGTDSFT
VTVSDGHGGTTTSTVTVTVNPVNDAPVFVDGGGTPVNTTDGYVFGYDENRPAGAVLGRVR
ATDVDSATVTYSILSGNDDGYFAIDPVTGEISLTPAGAAAFVNDYEAGANAHALVVGASD
GTVTTNIPVTLNEQNLNEAPTAPDDTKTTDEDTPVSGQIVGSDVDGDTLTYVKGSNPSHG
TVTVNADGTYTYVPGPNFNGTDSFTVTVSDGHGGTTTSTVNVTVNPVNDAPSATVTAPEA
VSEGSLPGGIPAAGEPPLQSTGTISIADPDSAASDLSVSLSGPNGVTSGGQPVSWTWDAD
THTLTGSVTVGGVTTEVMTVAVGNVAATGTGQFEAGYTVTLKAPIDHPPGNGEGVSNLHF
EAVVSDGQASGAPVGFDVPVKDDAPVLVSGEQAVDVAPIDTNLMVILDLSGSMGQETPTR
LSRAKEAVQNLIDGYDLYGDVRVQLVTFSTTGASQQAWMTAAEAKALVQNLQASGSTNYD
AALAAAMNGFSATGKLDGAQNVSYFLTDGEPTLGDGNTEQLANSSNSSTADRGIQAGEEA
IWTNFLSTHQINSFALGLGSSLNAAAQAFIDPIAYNGSTGTNTNGQIVTDTSQLNDMLQG
TISVPPTVSNLLTGGLGGSSGFGADGGHVSELSIDGTTYAFDSSTGLMTKTGPAAGSDYS
YDAATHQVTIATAQGGKLVVDFDSGEFSYQVAPRTSGSRNYDETLSYQVVDRDGDASNAA
TQTLHVNYTPAAGAAGAAALFTSADSLGLAGVEDVTVSLEQQQPQDAPHFPFADSPWGGT
QLSDMLHAYNAAESLQALLQAAFPPAFASTQASPTGLALASSADSLTAYAPPVAPSLDDE
LHMGLALHH
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgtttacaagtctggtggcgcatcccgcaaagcggcggcagacgcccctctg
gttctggatcgcccatcgatcgtgtcactgaagatcgcgcccgagagcgtgctcaggttc
gagcgtcgcggcggcgacctggtgctcgtgttgcagggcggccaggaagtcgccgtgcgg
ggcttcttcgccgagtaccctgacggcggccgcaacgacctcgtgctcgaagacggcgcc
ggcgtgcagtggtggggccagtacaccgcgccctggaaagacttccacttcaccgaaatc
gaatggaacgacgccggcgccgcgctgctgcccgacggtgtgcccggctggctgctgggt
gcgctcggcgtgctgggtgtcggtgccgccgcgagcggtggtggcggcggcggcggtggc
ggcccggccttcattccgccgctgctcccgccgcagaaccgcggccccgaaggcaaggcc
gagcccgtcgccaccgagcaggacaagcccatttccgggcaagtgcaggccaccgacccg
gaccgcgacacgctgaacttcaccgtcgccaagggccccgagcacggcaccgtcaccgtc
gacccgtccaccggccagttcctctacacgcccaaccccggctacgagggtcccgacagc
ttcgaagtgaccgtcagcgacggcaggggcggcaccaccaccgtgacggtgcccgtgacc
gtctcgcccgtcaacgacgcgcccacggcgcccgactacaccgagaccacgaacgaagac
acgcccgtgagcggccgtgtgaccggcagcgacatggacagcggcgacacgctgacctac
gtgaagggcagcgacccggcccacggcacggtgacggtcaacccggacggcacgtacacc
tacacgcccggcgccaacttcaacggcaccgacagcttcaccgtcacggtgagcgacggc
cacggtggcacgaccaccagcaccgtgaccgtgaccatcaaccccgtcaacgacgtcccc
gtgttcgtcgacggtggcggcaccccggtgaacacgacagacggctacgtcttcggctac
gacgagaaccggcccgcaggcaccgtgctcggcacggtccgcgccaccgacgtcgacagc
gcgaccgtgacctacagcatcctctcgggcaacgacgacggctacttcgccatcgacccg
gtcacgggcgcgatcagcctcacgccggcaggcgctgcggcgttcgtgaacgactacgag
gcaggcgccaacgcgcacgcactggtggtcggcgcgagcgacggcacggtcaccacgaac
atccccgtcacgctcaacgagcagaatatcaacgacgcaccgacggcgcccgacgacacc
aagaccacggacgaagacacgcccgtcagcggccagatcatcggaagcgatgccgatggc
gacacgctgacctacacgaagggcagcgacccggcccacggcatggtgacggttaacgcc
gacggcacctacacgtacacgcccggcgccaacttcaacggcacggacagcttcaccgtc
acggtgagcgatggccacggcggcacgacgacgagcaccgtgaacgtgacggtcaacccg
gtgaacgatctgcccacggtcccggactacaccaagaccacgcccgaagacacgcccgtc
agcggccaggtcatcggcaccgacgtcgacggcgacacgctgacctacgtgaagggcagc
gacccggcccacggcacggtgacggtcaacgccgacggcacctacacgtacacgcccggc
gccaacttcaacggcaccgacagcttcaccgtcacggtgagcgacggccacggtggcacg
accaccagcacggtgaacgtgaccgtcaacccggtgaacgacgcccccgtgttcgtcgac
ggcggcggcacgccggtgaacacgacggacggctacgtcttcggctacgacgagaaccgt
cctgcaggcaccgtgctcggcacggtccgcgccacggacgtcgacagcgcgaccgtgacc
tacagcatcctctcgggcaacgacgacggctacttcgccatcgacccggtcacgggcgag
atcagcctcacgccggcgggcgctgcggcgttcgtgaacgactacgaggcgggcgccaac
gcgcacgcgctggtggtcggcgcgaacgatggcacggtcacgacgaacattcccgtcacg
ctcaatgagcagaatatcaacgacgcaccgaaggcgcccgacgacaccaagacgacgaac
gaagacacgcccgtcagcggccaaatcatcggaagcgatgctgatggcgacacgctgact
tacgtgaagggcagtgatccgtcgcatggcacggtcacagtcaatgccgacggcacgtac
acctacacgcccggcgccaacttcaacggcaccgacagcttcaccgtcacggtgagcgac
ggccacggtggcacgaccaccagcaccgtgaccgtgaccatcaaccccgtcaacgacgtc
cccgtgttcgtcgacggtggcggcaccccggtgaacacgacagacggctacgtcttcggc
tacgacgagaaccggcccgcaggcaccgtgctcggcacggtccgcgccaccgacgtcgac
agcgcgaccgtgacctacagcatcctctcgggcaacgacgacggctacttcgccatcgac
ccggtcacgggcgcgatcagcctcacgccggcgggcgccgcagccttcgtgaacgactac
gaggcaggcgccaacgcgcacgcactggtggtgggcgcgagcgacggcacggtcaccacg
aacatccccgtcacgctcaatgagcagaacatcaacgacgcaccgacggcgcccgacgac
accaagaccacggacgaagacacgccggtcagcggccagatcgtcggcagcgacgtcgac
ggcgacacgctgacctacgtgaagggcaccgacccatcgcatggcacggtcacggtcaat
gccgatggcacctacacctatgttcctggcccgaacttcaacggcacggacagcttcacc
gtcacggtgagcgacggccacggcggcacgacgacgagcaccgtgaccgtgaccgtcaac
cccgtcaacgacgcccccgtgttcgtcgacggcggcggcacgccggtgaacacgacagac
ggctacgtcttcggctacgacgagaaccggcctgcaggcgccgtgctcggcagggtccgc
gccaccgacgtcgacagcgcgaccgtcacctacagcatcctctcgggcaacgacgatggc
tacttcgccatcgacccggtcacgggcgagatcagcctcacgccggcgggcgctgcggcg
ttcgtgaacgactacgaggcgggcgccaacgcccacgcgctggtggtcggcgcgagcgac
ggcacggtcacgacgaacatccccgtcacgctcaacgagcagaacctcaatgaagcgccg
acggcgcccgacgacaccaagaccacggacgaagacacgcccgtcagcggccagatcgtc
ggcagcgacgtcgacggcgacacgctgacctacgtgaagggcagcaacccatcgcacggc
acggtgacggtcaacgccgacggcacctacacctatgttcccggcccgaacttcaacggc
accgacagcttcacggtcacggtgagcgacggccatggcggcacgaccaccagcacggtg
aacgtgaccgtcaacccggtgaacgacgcgccatcggccacggtgactgcgcccgaggct
gtctccgaaggcagcctgcccggcggcattccggctgcgggagagccgccgctgcaatcg
accggcaccatttccatcgcggacccggacagcgcggccagcgacctgtcggtgtcgctg
agtggccccaacggcgtcacctccggcggccagccggtgtcgtggacctgggacgcggac
acgcacacgctcacgggcagcgtcaccgtcggcggcgtcaccaccgaggtgatgaccgtg
gcggtgggcaatgtcgctgccaccggcacggggcagttcgaggcgggctacaccgtcacg
ctgaaggcgccgatcgaccatccgccgggcaacggcgagggcgtgtcgaacctgcacttc
gaagccgtggtgagcgatggccaggccagcggcgcgccggtgggcttcgatgtgcccgtc
aaggacgatgcgccggtgctcgtgagcggcgaacaggccgtcgacgtggcgccgatcgat
accaacctcatggtgatcctggacctttccgggagcatggggcaggaaaccccgacacgc
ctcagccgcgcgaaagaggcggtccagaatctgatcgacggctacgacctgtacggcgac
gtgcgggtgcagctcgtcaccttcagcacgaccggggcgtcgcagcaggcctggatgacg
gcggccgaagccaaggcgctggtgcagaacctgcaggcttccggcagcaccaactacgat
gcggccctggctgcggcgatgaacggcttctcggccaccggcaagctcgacggggcccag
aacgtgtcctacttcctcacggacggcgagccgaccctgggcgacggcaacacggagcag
ttggcgaacagcagcaacagcagtacggccgacaggggcatccaggccggggaagaagcg
atctggacgaacttcctcagcacccaccagatcaactcgttcgcactgggcctgggctcg
agcctgaacgcggcggcacaggctttcatcgaccccatcgcctacaacggcagcaccggc
acgaacaccaacggccagatcgtcaccgacacgagccagctgaacgacatgctgcaaggc
acgatcagcgtgccgcccacggtcagcaacctgctgaccggcggcctcggcggctcgtcg
ggcttcggcgccgacggcggccatgtgtccgagctgagcatcgacggcaccacctacgcc
ttcgacagcagcacgggcctgatgaccaagaccggccccgccgccggcagcgactacagc
tacgacgcggcgacgcaccaggtcaccatcgccacggcgcagggcggcaagctggtcgtg
gacttcgactcgggcgagttcagctaccaggtggcaccgcgcaccagcggctcgcggaac
tacgacgagacgctcagctaccaggtggtcgaccgcgacggcgatgcgagcaacgcggcc
acgcagacgctgcacgtcaactacacgcccgcagccggtgcggcgggggcggcagcgctc
ttcacctcggccgactcgctgggtctggccggcgtcgaggatgtgacggtgtcgctcgag
cagcagcaaccgcaagatgcgccgcatttccccttcgccgacagcccgtgggggggcacg
cagctgtccgacatgctgcatgcctacaacgcggccgagtcgctgcaggcgctgttgcag
gccgcgttcccgccggccttcgcgagcacgcaggcatcgcccacggggctggccctggcg
tcatcggccgactcgctcacggcctacgcaccgcccgtggccccttcgctcgacgacgag
cttcacatgggcctcgcgcttcaccactga
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