Variovorax paradoxus B4: VAPA_1c47280
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Entry
VAPA_1c47280 CDS
T02835
Name
(GenBank) putative ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAPA_1c47280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c47280
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c47280
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAPA_1c47280
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAPA_1c47280
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VAPA_1c47280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGU51794
UniProt:
T1XHH7
LinkDB
All DBs
Position
1:4979295..4984286
Genome browser
AA seq
1663 aa
AA seq
DB search
MAVSLNSFARDGEVLLGHNIRRHDIPLMREQLPQLECLRWPVLDTLELSALAFPSNPYHR
LVKGYKLLSDERNNPTKDARIALNVFEEAVEALLETNEQEPWWLALLHFLLRSDESMATL
LAQVREETAPAGEAVGPIVASRFAGRCCATRLQALVADIATSFDGHDPWSIAFALGWIRV
SGGNSILPHWVFHELPAVRQLIAELREIDCGQTNCPYCRQNHNPEALLSSLFGKPGFRPH
PTTADGSSLQRAIVNAGLARESLLAVLPTGGGKSICYQLPALVHYRRSGRLTVVISPLQS
LMRDQVDNLMKADIQCAATVNGMLTPLERRDVLDRIRRGDIGIVLVSPEQFRSKTFVEAI
RMREIAAWVFDEAHCLSKWGHDFRTDYLYVSRFIREQFPGQAPIACFTATAKPDVIDDLC
DHFQEGLQIKLETFLGGHERTNLSYAVVPTSGGEKPQRIVELLRDGLRRDHAAVVFCATR
KSAETIAQIVAQQGIACGCYHGGLAADLRKETQRRFLDGELQVIAATNAFGMGVDKPNVR
LVIHADIPGSLENYLQEAGRAGRDGDEAKCVLLFDPKDVETQFRLSSTSQLSQRDFIGLL
RALRFQAKKLGKDEIVISAKELLAQSVGTGIEVDAPDASTKVTTALSWLERHGFLKRNEN
ATKVFPASLRVASLQEAKERIDKADFSASVQQKFLAVATALFRSDTPEGLSTDELMLDAG
IRPEECFRIVHQLAKLGILVNDLGLTVRLMRGVRGASASRLEYLSAMEKALIELMAENAP
DADQDEAQQHLNLRAVCTELRERLKLDDEKGQLDPTQVRACLRSMANGFGSGNDKRSMIQ
LQSLGDDTLRVTLRRPWSQIRRICELRRAVAQVTLTRLLAEVPEGVKGACLVECKAQALI
DALGDDLVLKTQLREPEVGLENALLYLHQTRVLELDKGRSVFRSAMTIQMDEDTARRFNQ
ASFAPLEEFYKERTLQTHVMHEYAKLGAEDPAKALDLVKAYFTLPHKQFVKEFFRGRTDL
LERKTTDESYQRIVDDLQHPVQQALVTQPRTGNHLVLAGPGSGKTRVIVHRIAYLLRVLR
VHPGRIIALAYNRGAAIQLRRRLMALAGDDARGVLVMTYHAMALRLTGTSLAGAERTSSS
VDFKKMLQDAIDLLEGKSSALIDADEVRDRLLQGYEYIFVDEYQDIDAQQYALVSALAGR
RRSDADTKLSIMAVGDDDQNIYSFKGANIEFIRRFRADYEGELTYLVENFRSTQNIISAA
NHVIQRGANRMKVDHPIRIDARRKDDPPGGRWAAIDQESRGAVRLITSPADPNLQVQLVH
AEIERLRRLDPTVKLSEIAVLCRTHAPLEKMRVICDVEGLPCEITGPEAAKGQIALMRTR
EGWALAQALRRRQLRMLRLSALRRSLDYLQRAQPRNAALLDLLDIVDDVAATLQADIVPA
AEALDLFYEAAGEMRRDGRASAIKLMTAHGAKGLEFDHVIVMDCADWRWDEEDERRLLYV
AMTRARQSLTLMRAEGGRNPYLVDLGTVNGVHDQLPGARPQHRADLERRYIMLGPASMDI
GFAGRASSAQPVHRAIAALRTGDVVEIEGRFVHSTSGQIVGRLAASVDAAPLQQGVSSVI
AVMVRTRSQTPEAYWPALQVDHWETPLAEVRITEPSATPVADD
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
gtggcggtatccctcaacagctttgcccgagatggcgaggttcttctcggccacaacatc
aggcgccacgacatccctctgatgcgcgagcagctcccgcagctggaatgtctgcgctgg
cccgtcctcgacacgctggagctgtccgccctcgccttccctagcaacccctatcaccgg
ctggtgaagggctacaagctgctctccgacgaacgcaacaacccgaccaaggacgcccgg
atcgcgctcaacgtgttcgaagaggccgtcgaagcgctgctggagacgaacgagcaagag
ccttggtggctggcattgctgcactttctgcttcgcagcgacgagagcatggcgacgctg
ttggcacaagtgcgtgaggagaccgctcccgctggcgaggcggtcgggccgatcgttgcc
agccgttttgcgggtcgctgctgcgccacccgtttgcaggcgctggtcgccgacatcgcg
acttccttcgacggccacgatccttggtcgatcgcgttcgccctgggctggatccgcgtc
tcgggaggaaactcgatccttccccactgggtcttccacgaactgcccgccgtcaggcaa
ttgattgccgagctgcgggaaatcgactgcggccagaccaactgcccatattgccgccag
aaccacaaccccgaggcgctgctgtcctcgttgttcggcaagccgggcttccggccgcac
ccgacaaccgccgatggctcatcgctgcagcgtgcgatcgtcaatgccggactggcacgc
gagagcctgttggccgtgctgcccaccggcggcggcaaatccatctgctaccagctcccc
gccctcgtccactaccgccgctcagggcggctgaccgtcgtcatctctccgctgcagtcg
ctcatgcgagaccaggtggacaacctgatgaaagccgacatccaatgcgcggcaaccgtc
aacgggatgctcaccccactggaacggcgagatgtgctggaccgcatccgccggggcgac
atcggcatcgtgctcgtctcacccgagcaattcagaagcaagactttcgtcgaagccatc
cgcatgcgggagatcgcggcctgggtgttcgacgaagcccactgtctctccaagtggggg
cacgacttccgcacggactatctgtacgtctcgcgcttcatccgggagcagtttcccggt
caggcaccgatcgcctgtttcaccgccaccgccaagccggacgtcatcgacgacctgtgc
gaccacttccaggaaggccttcagatcaagctggagacattcctcggtggccacgagcgc
accaacctgtcctatgccgtggtgccgacctcgggcggcgagaagccgcagcgcatcgtg
gaactgctgcgcgacggcctgcgacgagaccatgccgccgtggtcttctgtgccacgcgc
aagagcgccgagaccatcgcacagatcgtcgcgcaacagggcatcgcatgcggctgctac
cacggcgggctcgccgctgatttgcgcaaggagacccagcgacgtttcctcgacggcgaa
ctgcaggtgatcgccgccaccaacgcgttcggcatgggcgtggacaagcccaacgttcgg
ctggtgatccatgccgacattcccggctccctggagaactacctccaagaagctggaaga
gccgggcgcgatggggacgaagccaaatgcgtcctgctgttcgaccccaaggacgtggaa
acccaattccgcctgtcctccacctcccagctgtcgcagcgagatttcattggactgctg
cgtgccttgcgcttccaggccaagaagctgggaaaagacgagatcgtcatctccgcgaaa
gagctgctcgcgcagagcgtcgggaccggcatcgaagtcgatgcccccgacgcctccacc
aaggtcaccacggcgctgtcgtggcttgagcgccatggcttcttgaagcgcaacgagaac
gccaccaaggtcttccctgccagtcttcgggtggcctcgctgcaggaagccaaggagcgc
atcgacaaggcggatttttccgccagcgttcagcagaagtttctcgctgtcgccactgcc
ctgttccgctccgacacgcccgagggactcagcaccgacgagctcatgctcgacgcgggc
atccgaccggaggagtgctttcgcatcgttcaccagctggccaagctgggcatcctggtc
aatgacctcggactgacggtgcgcctgatgcgtggcgtgaggggcgcgtccgcctcccgc
ctcgaatatctgagtgccatggagaaggcgctcatcgagctcatggccgaaaacgccccg
gacgcggatcaggacgaagcgcaacaacacctgaatctccgagcggtctgcacggagctg
cgcgaacgtctgaagctcgacgacgaaaaggggcaactcgaccccactcaggtccgggcc
tgcttgcgatccatggccaacggtttcggctctggcaacgacaagcgcagcatgatccag
ctgcagtcgctgggcgacgacaccctgcgcgtcaccttgcgtcggccttggtcccagatc
cgcaggatctgcgaactgcgccgtgccgtcgcccaagtcacgctcacgcggctgcttgca
gaggtgccggaaggcgtcaaaggcgcatgcctggtggagtgcaaggcccaggcactgatc
gatgcgctcggtgacgatctggttctgaagacccagctgcgcgagcccgaagtggggctg
gagaatgcgctgctctaccttcaccagacgcgtgtgctcgaactggacaaaggcaggtcc
gtcttccgctctgcgatgaccatccagatggacgaggacaccgccaggcggttcaaccaa
gcatcgtttgcgcctctggaagagttctacaaggaacggacgctgcagacgcacgtcatg
cacgagtacgccaagctcggcgcagaagatccggcgaaagcgcttgatctggtcaaggcc
tacttcaccctgccccataagcagttcgtcaaggaattcttccgcggacgcacggacctg
ctggagcgcaagaccacggacgaatcctaccagcgcattgttgatgacctgcagcacccc
gtgcagcaagccctggtcacgcagccccggacaggcaatcacctggtcttggcgggtcca
gggtccggcaagacgcgggtgatcgtccaccgcatcgcctacttgctgcgcgtattgcgc
gtgcatccggggcgcatcatcgcgctggcctacaaccggggggcggccatccagctgcgc
cgccgactgatggcgctcgccggagacgatgcacgcggcgtgctggtcatgacctaccac
gcgatggcgctgcgcttgaccggaaccagtctggccggggcggagcgcacctccagcagt
gtcgacttcaagaagatgctccaggacgccatcgatctgctcgaaggcaagagctcggcc
ctgatcgacgcggacgaagtccgcgatcgcctgctgcagggctacgaatacatcttcgtc
gacgagtaccaggacatcgacgcgcagcagtacgcgctggtcagcgcccttgccggccgc
cggcgatcagacgccgacaccaagctgagcatcatggccgtgggagacgatgaccagaac
atctactccttcaagggtgcgaacatcgagttcatacggcgcttccgggccgactatgaa
ggggaactcacctacctggtcgagaacttccgctccacccagaacatcatctcggccgcg
aaccatgtgatccagcgcggtgccaatcgcatgaaggtcgatcaccccatccggatcgac
gctcggcgcaaggacgatccaccgggcgggcgctgggccgcgatcgaccaggaaagccgc
ggcgcggtacggttgatcaccagtccggcagacccgaaccttcaggtccaactggtccac
gcggagatcgagcgcctccggcgcctcgatccgacggtcaagctctcggagatcgcggtg
ctctgccgcacacacgctccgctggaaaagatgagggtcatttgcgatgtcgaaggcctg
ccctgcgagatcaccggcccggaagcggccaaagggcagatcgcgctgatgcggacgcgc
gaaggctgggccttggcccaggcactgaggcggcgacagctgcgcatgttgcgactcagc
gcgctgcgcaggtccctggactatctgcaacgcgcccagcccagaaacgccgcgctgctg
gatctcctcgacatcgtcgatgacgtcgccgccacactgcaggcagacatcgttccagca
gccgaagcgctcgacctgttctacgaagccgccggcgaaatgcgacgggatggccgcgca
agcgccatcaagctcatgactgcacatggcgccaagggcctggagttcgaccacgtcatc
gtgatggactgcgccgactggcgttgggacgaagaagatgaacgacgacttctctatgtg
gcgatgacccgtgcccgtcaatcgttgaccctgatgcgcgcagagggtggacgcaacccc
tatctcgtagaccttggaaccgtcaacggcgtccacgaccagttgcccggagcccgccca
caacatcgagcggacctggaacgccgctacatcatgctcggcccggccagcatggacatt
ggatttgctggacgggcgtcgtcggctcagccagttcatcgagcgatcgcggccttgcgg
accggagatgtcgtcgagatagaaggccgattcgttcactcgacctctgggcagatcgtt
ggccggctggccgcaagcgtggatgcggcacctctccagcaaggggtctcctccgtcatt
gcagtcatggtgcgaacccggtctcagacgcccgaggcgtactggccggcgctgcaagtc
gatcactgggaaacgccgctcgcggaagtccggattacggagccatccgcgacgccagtt
gctgacgattga
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integrated database retrieval system
