Variovorax paradoxus B4: VAPA_1c47740
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Entry
VAPA_1c47740 CDS
T02835
Name
(GenBank) transcriptional regulator, Fis family
KO
K03557
Fis family transcriptional regulator, factor for inversion stimulation protein
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpd03000
]
VAPA_1c47740
03036 Chromosome and associated proteins [BR:
vpd03036
]
VAPA_1c47740
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c47740
Transcription factors [BR:
vpd03000
]
Prokaryotic type
Helix-turn-helix
Other families
VAPA_1c47740
Chromosome and associated proteins [BR:
vpd03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
VAPA_1c47740
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VAPA_1c47740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_8
HTH_30
Phage_NinH
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
AGU51840
UniProt:
T1XI70
LinkDB
All DBs
Position
1:complement(5034480..5034716)
Genome browser
AA seq
78 aa
AA seq
DB search
MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWL
GLNRNTLRKKLVEHKLLK
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaacacatcgaggactgcgtgcgcaccagtctggacagctactttcgcgat
ctgcgcggcaccgaacccgacggcatgtacgagatgctcgtgcgcgtggtcgagaagccc
ctgctcgacgtcgtgatgacgcgcgccgagggcaaccagtcgaaggccgcgcaatggttg
ggcctgaatcgcaacacgcttcgcaagaagctggttgaacacaaacttttgaaataa
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