Variovorax paradoxus B4: VAPA_1c48930
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Entry
VAPA_1c48930 CDS
T02835
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00730
Thiamine metabolism
vpd01100
Metabolic pathways
vpd01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
VAPA_1c48930 (thiC)
Enzymes [BR:
vpd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
VAPA_1c48930 (thiC)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
AGU51958
UniProt:
T1XHC3
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All DBs
Position
1:5158408..5160294
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AA seq
628 aa
AA seq
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MNAPDKFTSLLSLTREPFPASHKCLIPGSRPDLNVPVRDVLLTNGETVSLYDTSGPYTDA
KVEIDVRRGLPGVRGAWIAERNDTESYEGRSHQALDEGLKHAHDHDAQRLAELRAGASAL
QRTPRRAKSGANVTQMHYARRGIVTPEMEYVALRENGKREWMAEYLANEERAKRVAGNPM
GASIPRIITPEFVREEVARGRAIIPANINHPEVEPMAIGRNFKVKINANIGNSAVTSSIE
EEVEKLVWAIRWGADNVMDLSTGKNIHTTRDWIVRNSPVPIGTVPIYQALEKVGGVAEDL
TWEIFRDTLVEQAEQGIDYFTIHAGVRLPFIHLTADRMTGIVSRGGSIMAKWCIAHHKES
FLYERFEDICDIMKAYDVSFSLGDGLRPGSGADANDEAQFAELRTLGELTQIAWKHDVQT
MIEGPGHVPMHMIQANMDEQLKHCHEAPFYTLGPLTIDIAPGYDHISSAIGAAMIGWAGT
AMLCYVTPKEHLGLPDRDDVKQGIIAYKIAAHAADVAKGHPGARSRDDALSKARFEFRWQ
DQFNLGLDPDTAREFHDETLPKDSSKVAHFCSMCGPKFCSMKITQEVREYAAKKGVAESE
AMAAGMAEKSQEFAAAGGEMYIPIRAVS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccccagacaagttcacctccctgctctcgctcacgcgcgagccctttcccgca
tcgcacaagtgcctgatcccgggcagccggcccgacctcaacgtgccggtgcgcgacgtg
ctgctgaccaacggcgagaccgtgtcgctctacgacacctcgggcccctataccgatgcc
aaggtcgagatcgacgtgcgccgcggcctgcccggcgtgcgcggcgcctggatcgccgag
cgcaacgacacggaaagctacgaaggccgctcgcaccaggcgctcgacgagggcctcaag
cacgcccacgaccacgatgcccagcgcctggccgaactgcgcgccggcgcctcggccctg
cagcgcacgccgcgccgcgccaagtcgggcgccaacgtcacgcagatgcactacgcgcgc
cgcggcatcgtcacgcccgagatggaatacgtggcactgcgcgagaacggcaagcgcgag
tggatggccgaatacctcgccaacgaggagcgcgcaaagcgcgtggccggcaaccccatg
ggcgccagcattccgcgcatcatcacgcccgagttcgtgcgcgaggaagtggcgcgcggc
cgcgccatcattccggccaacatcaaccaccccgaagtcgagccgatggccatcggccgc
aacttcaaggtcaagatcaacgccaacatcggcaactcggccgtcacctccagcatcgag
gaagaagtggaaaagctcgtgtgggcgatccgctggggcgccgacaacgtgatggatctt
tccaccggcaagaacatccacaccacgcgcgactggatcgtgcgcaacagtcccgtgccc
atcggcacggtgccgatctaccaggcgctggagaaggtgggcggcgtggccgaggacctg
acctgggagatcttccgcgacacgctggtcgagcaggccgagcagggcatcgactacttc
accatccacgccggcgtgcgcctgccgttcatccacctgacggccgaccgcatgacgggc
atcgtctcgcgcggcggctcgatcatggccaagtggtgcatcgcgcaccacaaggagagc
ttcctgtacgagcgcttcgaggacatctgcgacatcatgaaggcctacgacgtgagcttc
tcgctcggcgacggcctgcgcccgggctcgggcgccgatgccaacgacgaagcgcagttc
gccgagctgcgcacgttgggcgagctcacgcagatcgcgtggaagcacgacgtgcagacc
atgatcgaagggccgggccacgtgccgatgcacatgatccaggccaacatggacgagcag
ctcaagcactgccacgaggcgccgttctacacgctcggcccgctgacgatcgacatcgcg
ccgggctacgaccacatctcgagcgccatcggcgccgcgatgatcggctgggccggcacc
gcgatgctctgctacgtgacgcccaaggagcacctgggcctgcccgatcgcgacgacgtc
aagcaggggatcattgcctacaagatcgccgcgcatgcggccgacgtggccaaggggcat
ccgggggcacgctcgcgcgacgacgcgctcagcaaggcgcgcttcgagttccgctggcag
gaccagttcaacctgggcctcgaccccgacacggcgcgcgaatttcatgacgagacgctg
cccaaggattcgagcaaggtcgcgcacttctgctcgatgtgcggaccgaagttctgctcg
atgaagatcacgcaggaagtgcgcgagtacgcggcgaagaagggcgtggccgagtcggaa
gccatggcggccggaatggccgagaaatcgcaggagttcgcggcagccggtggagagatg
tacataccgattcgggccgtgtcgtag
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