Variovorax paradoxus B4: VAPA_1c49860
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Entry
VAPA_1c49860 CDS
T02835
Name
(GenBank) putative ribosomal RNA small subunit methyltransferase I
KO
K07056
16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:
2.1.1.198
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpd03009
]
VAPA_1c49860
Enzymes [BR:
vpd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.198 16S rRNA (cytidine1402-2'-O)-methyltransferase
VAPA_1c49860
Ribosome biogenesis [BR:
vpd03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
VAPA_1c49860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TP_methylase
RsmI_C
TruB_C
Motif
Other DBs
NCBI-ProteinID:
AGU52041
UniProt:
T1XHP4
LinkDB
All DBs
Position
1:5262160..5263116
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AA seq
318 aa
AA seq
DB search
MASLAPASFGAALAAARDASGAQHYPQGTLYVVATPIGNLADITLRALHVLQLVDAIACE
DTRHTQSLLRAYGIDRPNAQLLAVHQHNEAEAAQAVVARLAQGERIAYVSDAGTPGVSDP
GARLVAAVRAAGQRVLPLPGASSVTTLVGAAGLVAAGDESSAFVFAGFLPTKAGERDAAV
QALAQERRAVVLLEAPHRIEAVARALATLGERRITVGRELTKQFEEIATVAAAELPGWFA
AGRDRTRGEFALVLHPVAAAADDGAEGERVLRLLLAELPVKTAVRLAAEISGAPRNALYE
TALRIRNDDGNEEDESGA
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
ttggcttcactcgcacccgcttccttcggcgccgccctggcggccgcgcgcgatgcctcg
ggtgcacagcattatccgcagggcacgctctacgtggtggccacgcccatcggcaacctg
gccgacatcacgctgcgcgcgctgcatgtgctgcagctggtggacgccatcgcctgcgag
gacacgcgccacacgcagagcctgctgcgcgcctacggcatcgaccggccgaatgcccag
ctgctggccgtgcaccagcacaacgaggccgaggccgcccaggccgtggtcgcgcggctc
gcgcagggcgagcgcatcgcctacgtgagcgacgccggcacgcccggcgtgagcgacccg
ggcgcgcggctggtcgcggccgtgcgcgccgccggccagcgcgtgctgccgctgccgggc
gcaagcagcgtcaccacgctggtcggcgccgccggcctcgtggcggcgggcgacgagagc
agcgccttcgtgttcgcgggcttcctgccgacgaaggccggcgagcgcgacgcggccgtg
caggcgctcgcgcaggagcggcgcgcggtggtgctgctggaagcgccgcaccgcatcgag
gccgtggcgcgcgccctcgcgacgctgggcgagcgccgcatcaccgtcggccgcgaactc
accaagcaattcgaggagatcgcgaccgtcgccgccgcggagctgccgggctggttcgcc
gccggccgcgaccgcacgcgcggcgaattcgcgctggtgctgcacccggtggccgcggcc
gccgacgacggtgccgaaggcgaacgcgtgttgcgcctgctgctggccgagctgcccgtg
aagaccgcggtgcggctcgcggccgagatcagcggcgcgccgcgcaatgcgctgtatgaa
acggcgctgcgcattcgaaatgacgacggcaacgaggaagacgagagcggcgcatag
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