Variovorax paradoxus B4: VAPA_1c52200
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Entry
VAPA_1c52200 CDS
T02835
Name
(GenBank) TonB-dependent siderophore receptor
KO
K02014
iron complex outermembrane recepter protein
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c52200
Transporters [BR:
vpd02000
]
Other transporters
Pores ion channels [TC:
1
]
VAPA_1c52200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
DUF7552
Motif
Other DBs
NCBI-ProteinID:
AGU52273
UniProt:
T1XI89
LinkDB
All DBs
Position
1:complement(5494816..5496891)
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AA seq
691 aa
AA seq
DB search
MTLSHAQATDPAADARGQLGTVTVESSSTTGFVANTVEAGTFRGANIMDVPATVNTVTRD
VLELQGAASIYEALRNTAGVTRQQNGGDTFDQLVIRGIAVENRTNYRLNGSLAIPNISEI
PMENKERVEVLKGASALYYGFTTPAGIVNLVTKRAGSAPVSTVGLTFDDRGSAQALVDLG
RQFGDQTQYGLRINAAGGRIGSNIDDVDGHRRFVSAAFDWRVNSRLTLKADIENYRKRIT
EQAGITRLAAVNGVIALPAVPNPDKLLGPPWAVFDAEVTNTQLRADYSLGDNWALTVEAG
HSEAERDRRLASFGNYNVLTGAGRITGNDQSLKQSSDLLRTELFGSFSTGSVQHELTLGA
ARSKKTQDPIFQRNYGGASTVQNLYNPVSIGYLPLTARPTRPTTGAQESEELGLYALDRI
TFSPQWQLVAGLRRTHYESTQGASATIPSIAYDVRKTTPLAALSYKFTPALVAYVSYAQG
VEEGEIAPAGTANQNAHMPPGVSKQKEIGLRWLTDGGMLLSGALFDIERPGAYTNSANTF
VADGRQRYRGLEVSAQGRLTRELAWQLSAQSLDAEFRGINAQYNGKMPENTARQTASAFL
SYDIAAVPGLSVNAGAYYTGRRPVDDLNQAFIGGNTIFGLGARYVTQLFGKRTLWQVNVD
NVADKRYWAAAGTRLAVGAPRSIKATLKVDL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgactctttctcacgcgcaagccaccgatcccgccgccgatgcgcgcgggcagctcggc
accgtcacggtggaatccagttcgaccaccgggttcgtcgccaataccgtggaggccggc
acgttccgcggcgccaacatcatggacgtgcccgccacggtcaacaccgtcacgcgcgac
gtgctggagctgcagggcgcggccagcatctacgaggcgctgcgcaacacggccggcgtg
acgcgccagcagaacggcggcgacaccttcgaccagctcgtgatccgcggcatcgcggtg
gagaaccggacgaactaccggctcaacggctcgctcgcgattcccaacatctccgagatt
cccatggagaacaaggagcgcgtcgaggtgctgaagggcgcatcggcgctctactacggc
ttcaccacgccggcgggcatcgtcaaccttgtgaccaagcgcgccggcagcgcgcccgtg
agcacggtgggcctcacgttcgacgaccgcggctcggcgcaggcgctggtcgacctcgga
cggcagttcggcgaccagacgcagtacgggctgcgcatcaacgcggccggcgggcgcatc
ggctccaacatcgacgacgtggacggccaccgcaggttcgtgtcggccgcgttcgactgg
cgcgtcaacagccggctcacgctgaaggccgacatcgagaactaccgcaagcgcatcacc
gagcaggccggcatcacccggctggcggccgtcaacggcgtgatcgccctgcccgccgtg
cccaaccccgacaagctgctcgggccgccgtgggccgtgttcgacgccgaggtcaccaac
acgcaattgcgcgccgactattcgctcggcgacaactgggcgctgaccgtggaagccggc
cactccgaggccgagcgcgaccgccggcttgcaagcttcggcaactacaacgtactgacc
ggtgccggccgcatcaccggcaacgaccagagcctgaagcagagttcggacctgctgcgc
accgaactgttcggcagcttctcgaccggcagcgtgcagcacgaactcacgctcggcgcc
gcgcgcagcaagaagacgcaggacccgatcttccagcgcaactacggcggcgcaagcacg
gtgcagaacctgtacaacccggtttccatcggctatttgccgctgacggcgcggccgacc
cggcccaccaccggcgcccaggagagcgaggagctcgggctctatgcgctcgaccgcatc
accttctcgccgcagtggcagctggtggccggcctgcgccgcacccattacgagagcacg
cagggcgccagcgccacgatcccgtcgatcgcctacgacgtgcgcaagaccacgccgctc
gctgcgctgagctacaagttcacgcccgcgctggtggcatacgtctcctatgcgcaaggt
gtcgaggaaggcgagatcgcacccgccggcaccgccaaccagaacgcccacatgccgccc
ggcgtgagcaagcagaaggaaatcggcctgcgctggctcaccgatggcggcatgctgctg
tcgggcgcgctgttcgacatcgagcgccccggcgcctacaccaacagcgccaacaccttc
gtggccgatgggcgccaacgctaccgcgggctcgaagtctcggcacagggccgcctgacg
cgcgagctcgcctggcaactgtcggcccagtcgctcgacgccgagttccgcggcatcaac
gcgcaatacaacgggaagatgcccgagaacaccgccaggcaaacggccagcgccttcctc
tcgtacgacattgccgcagtgccgggcctctcggtcaacgcgggcgcctattacacgggg
cgtcgaccggtggacgacctgaaccaggccttcatcggcggcaacaccatcttcggcctg
ggcgcgcgctacgtgacgcagctgttcggcaagcgcacgctgtggcaggtcaacgtcgac
aacgtggccgacaagcgctactgggcggcggccggcacgcggctggccgtgggcgcgccg
cgcagcatcaaggccacgctcaaggtcgacctttga
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