Variovorax paradoxus B4: VAPA_1c53760
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Entry
VAPA_1c53760 CDS
T02835
Name
(GenBank) PilC beta-propeller domain-containing protein
KO
K02674
type IV pilus assembly protein PilY1
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
vpd02044
]
VAPA_1c53760
02035 Bacterial motility proteins [BR:
vpd02035
]
VAPA_1c53760
Secretion system [BR:
vpd02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
VAPA_1c53760
Bacterial motility proteins [BR:
vpd02035
]
Pilus system
Pilus assembly proteins
VAPA_1c53760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4P_PilY1
PQQ
PQQ_3
DUF3348
Motif
Other DBs
NCBI-ProteinID:
AGU52428
UniProt:
T1XIN6
LinkDB
All DBs
Position
1:5651793..5655689
Genome browser
AA seq
1298 aa
AA seq
DB search
MKNRLTPVLDRKPQRQAICCAVMVCAFLVGLFAPVVEAASTDLSNQPLATLPAVQAKPNL
LFVLDDSGSMDNDYMPDQMSSGKYGYRSAQCNGVAYDPEMTYSPPLNADGTSYPNAVFTA
ARSDGYDASSSTVNLNNRLYYTYSGTQPKMGWAYTSSGAVRNTFYNECMTSTNSSTSLFH
PVTVTSASAEAQNYANWYSYYRKRYLLMRTAMGRAIAALDSSYRVGFSTISDGTAVDGDN
YFRDVKDFDLAQKTNFYNSLYSASPNGWTPLRSALSKAGRYFANKAPDQSYDPVQYSCQR
NYALLSTDGYWNKTKGLKLNGTSEIGQQDGTEARPMRDDAQVIVTTVTPYTQALTRDSVS
TQTQTRIWTRTSTTISSTPKPNNPNRGRYAVTTRTNQRYTETQTRTRTTPQSATSSYSET
VVTTDGVETSRSTSTPVTSAWISTATPTESLTGNGPPTASSSFTTGTANTTYQTAKGDDV
TVYSDPVAGAWSAWSTPADITNTTPVAQAPITGTPTQTPSTSGGTGNTLADVAQYYFATD
LRTSALGNCTSSSSGSSQDVCSNIVRPVGSDKAAWQHMNSFTIGLGVSGTLPYDKNYLTQ
TAGSYVDLTSGSLSWPVPEGADLDDGQGGNATNVDDLWHAAVNGRGQYYSALNASALSEA
INGVVTSVQQVSGSGATASTSSLQLVAGDNNLVFRASYTTQLWTGDLQAFAINGSTGVIA
NTATWSAQARLDATAASDRRIYFSNGSALQSFEYGNLSTAQRGYFDNLCSQTLIAAQCSV
LSDSNKTLANNGANLVNYLRGVRTYETASVDGSNNSIAALYRKREHVLGDIINGAPVYVG
KPPFRYADAGYADFVTAQSTRAPVVYVGSNDGMLHAFSAATGSAGGTELWAYVPGTVMPN
LYKMADTSYGAKHQYSVDGAPVMGDIKVGTAWKTIVVGGLNSGGRGYYALDITDPNDPKA
LWEFTDPNLGLSFGNPVIAKRGDGTWIVAFASGYNNTNGDGKGHLYVLNANTGALLLDIP
TSDGSSTDPSGLAKINAWIESSSDNTAKRFYGGDQQGNLWRFDIDGLLQPNRAAMRLAKF
QINDSTPQPITTKPETVEISGKPVVVVATGRYLGSSDIADSTQQSIYAVRDTLTATGWSD
VRADTENFVRQTFTLNGPVATATSASVSNTSVNWATKGGWWIDLPHSRERVNTNLGLQFS
TLSVATAIPNGDACASGGTAWRYYLNVANGGVVTTNPAGGLFSTDGLIMGMTWVQDSNGN
ARIIYQKSNGDNVIETPPVATSSGSGSVHRTSWRELVD
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatagactcactcctgtcctcgatcgaaagccccaaaggcaggccatctgctgt
gcggtgatggtctgtgcatttctggtgggtttgttcgcccccgttgtcgaggcggcctcc
acagacctgtcgaaccagccgctggccacgctgcctgccgttcaagccaagccgaacctg
ttgttcgttctggacgattcggggagtatggacaatgattacatgccggaccaaatgtcc
agcggcaagtatggataccgctccgcacaatgcaatggtgtggcttacgaccccgagatg
acctattcgccaccgctcaacgcggatggaacgtcctatcccaatgcggtttttacggca
gcgcgtagcgatggctatgacgcgtcgagttcaacggtcaatctgaacaaccggctctat
tacacatacagcggcactcaacccaagatgggctgggcgtacaccagcagcggagccgtt
cgaaacacgttctacaacgaatgcatgacttcgaccaactcgtcgaccagtctttttcac
ccggtgacggtcaccagcgcttccgccgaagctcaaaactacgccaactggtattcgtac
taccgcaagcgctacctgttgatgcgtaccgccatgggccgggcgatcgcggcgctcgac
tcgagctatcgcgttggcttcagcacaatcagtgatggaaccgcggtggatggcgacaac
tactttcgcgatgtcaaagatttcgatctggcgcaaaaaacaaacttctacaacagcctc
tacagtgcctcgccaaacgggtggacaccgttgcgctcggccctgtccaaggcgggacgg
tacttcgcgaacaaagctcctgaccagagctacgacccggtccagtactcctgccaacgc
aactatgcgctcctctcgacggacggctactggaacaagaccaagggcctgaagctcaac
ggtaccagtgagatcgggcagcaagacggtaccgaggctcgcccgatgcgggacgacgcc
caagtcatcgtcacaaccgtgacgccctacacccaggcgctgacgagagattcggtgtcc
acgcagacgcaaaccaggatctggacgcgcacctccaccactatttcctcaacgccaaag
cccaacaatccgaacaggggacggtatgccgtcaccacgcgtacgaatcagcgctacacc
gagacgcaaacccgaacccggacaacgcctcaatcggcaacctcgtcctactccgagacg
gtagtgacaaccgacggtgtcgagacgtccagaagcaccagcacgccagtcacttccgcc
tggatcagcaccgcgacaccgaccgagtcgctcacaggcaatggccctcccaccgccagc
agcagcttcacgaccggaaccgcgaacacaacctaccagacagccaagggtgatgacgta
acggtctattcggatccagtcgcaggagcctggagtgcatggtctacaccggcagacata
accaacacgacgccggttgcccaggcccctattacaggcacgccaacccaaacaccgtcc
acctcgggcggtaccggcaacacgctggccgacgttgcccagtactacttcgcgacggac
ctgcgcaccagtgcgctcggcaattgcacttcgagcagctccggcagcagccaggatgtc
tgcagcaacatcgtgcgcccagtgggaagcgacaaggccgcatggcagcacatgaattcg
ttcacgattggccttggcgtgagcggcaccttgccttatgacaagaattacctgacccaa
accgcaggttcctacgtagatctgaccagtggcagcttgagctggcccgtgcccgaaggc
gcggacctggatgacggtcagggcggtaatgccaccaacgtcgacgacctgtggcacgca
gccgtcaatggccgcggccagtactactcggcactcaatgccagtgcgctgagcgaagcc
atcaacggcgtcgtcacgtcggtgcagcaggtctcgggctcgggtgctacggcatcgacc
agttcgctccaactggtggccggtgacaacaacctggtctttcgggccagctacaccacg
cagctgtggaccggcgatctgcaggcctttgcaatcaacggttcaacgggcgtcattgcg
aataccgccacgtggtctgcacaggcaagactcgatgcgacggctgcttctgaccgcagg
atctacttcagcaacggttcggctctccagagcttcgaatacggcaacctgagcaccgca
caaaggggctacttcgacaatctctgcagccagaccctcattgccgcgcagtgctcggtg
ctttctgacagcaacaagacgctggccaacaatggtgccaacctcgtcaactacctgcgc
ggcgtacgcacctacgaaaccgccagcgtcgacggctccaacaacagcatcgccgcgctt
tatcgcaaacgcgaacatgtgctgggcgacatcatcaacggcgcccccgtctatgttgga
aaaccgcccttccgctacgccgacgccggctacgccgatttcgttacggcgcagtcaacg
cgcgcacccgtggtgtacgttggctcgaacgacggcatgctgcacgccttctcggccgcc
accggcagcgcgggcggcactgaactctgggcctatgttccgggcacggtcatgcccaac
ctctacaagatggccgacacgagctatggagcgaagcaccaatactccgtggacggagca
ccggtcatgggcgacatcaaggttggaaccgcctggaagaccattgttgttggcggcctg
aacagcggcggccgcggctactacgcactcgacatcaccgaccccaacgatcccaaggct
ctttgggagttcaccgatcccaacctgggcctgagctttggcaacccggtgattgcaaag
cgcggcgacggcacctggatcgttgcctttgcttccggctacaacaacaccaatggcgac
ggcaaaggccacctctacgttctgaatgccaacaccggcgccctgctgctggacattccc
accagcgacggcagcagcaccgacccgagcggcctcgcaaagatcaacgcctggatcgaa
agctccagcgacaacacagccaagcgcttctacggcggcgatcagcaaggcaacctctgg
cgcttcgacatcgacgggctcctgcaacccaaccgggcagcgatgcggctcgccaagttc
cagatcaacgactcgacgccgcaaccgatcaccacaaaaccggaaaccgtggagatttca
ggcaagccggtggtcgtggttgcgacgggccggtacctgggttcgtcagacattgcggat
tcgacgcagcaaagcatctacgcggtgagggacacgctgaccgccaccggatggagcgac
gtgcgcgccgacactgaaaactttgtcaggcagacattcacgttgaatggccctgtggca
actgcgacatcggcctcggtatccaacacgtcggtcaactgggcgaccaagggcggttgg
tggatcgacctgccgcattcgcgtgaacgcgtgaataccaacctgggcctgcagttcagc
accctgtcggttgccaccgccatcccgaacggtgatgcctgcgcgtcgggcggcacggcc
tggcgctactacctcaatgtggccaatggcggcgttgtcacgaccaacccggccggcggg
ctcttcagcaccgacgggctgatcatgggcatgacctgggtgcaggacagcaacggcaat
gcccgcatcatttaccagaagagcaatggcgacaacgtgatcgagacgccgccggtggcg
acatcgtccggctccggcagcgtacatagaacctcctggcgcgagttggtggactga
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