Variovorax paradoxus B4: VAPA_1c53990
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Entry
VAPA_1c53990 CDS
T02835
Symbol
sucD3
Name
(GenBank) succinyl-CoA ligase [ADP-forming], subunit alpha
KO
K01902
succinyl-CoA synthetase alpha subunit [EC:
6.2.1.5
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00020
Citrate cycle (TCA cycle)
vpd00640
Propanoate metabolism
vpd00660
C5-Branched dibasic acid metabolism
vpd00720
Other carbon fixation pathways
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
Module
vpd_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vpd_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
VAPA_1c53990 (sucD3)
00640 Propanoate metabolism
VAPA_1c53990 (sucD3)
00660 C5-Branched dibasic acid metabolism
VAPA_1c53990 (sucD3)
09102 Energy metabolism
00720 Other carbon fixation pathways
VAPA_1c53990 (sucD3)
Enzymes [BR:
vpd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
VAPA_1c53990 (sucD3)
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SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
Ligase_CoA
CoA_binding
Succ_CoA_lig
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
AGU52451
UniProt:
T1XIS8
LinkDB
All DBs
Position
1:complement(5679464..5680357)
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AA seq
297 aa
AA seq
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MSIYINKDTKVITQGITGKTGQFHTEKCQEYANGKNCFVAGVNPKKAGESIFNIPIFGSV
KEAASQTGATVSVIYVPPAGAAAAIWEAVEADLDMAICITEGIPVRDMLEVRNRMKAKEA
AGGKKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVAQLTEIGLG
QSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEADAARWCKEHMKKPVV
GFIAGVTAPPGKRMGHAGALISGGADTADAKLAIMEECGFTVTRNFSELAKLLKAQL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatctacatcaacaaagacaccaaagtcatcacgcaaggcatcaccggcaagacc
ggccagttccacaccgagaagtgccaggaatacgcgaacggcaagaactgcttcgtcgcg
ggcgtgaaccccaagaaggccggcgagtcgatcttcaacatcccgatcttcggttcggtg
aaggaagccgcctcgcagaccggcgccaccgtgtcggtgatctacgtgccgccggcaggc
gcggccgccgccatctgggaagccgtcgaggccgacctggacatggcgatctgcatcacc
gaaggcatcccggttcgcgacatgctcgaagtgcgcaacaggatgaaggccaaggaagcg
gccggcggcaagaagaccctgctgctgggcccgaactgccccggcctgatcacgcccgac
gaaatcaagatcggcatcatgcccggccacatccaccgcaagggccgcatcggcgtggtc
tcgcgctcgggcacgctcacgtacgaagccgtggcgcagctcaccgaaatcggcctcggc
caatcgtcggcagtcggcattggcggcgacccgatcaacggcttgaagcacatcgacgtg
atgaaggccttcaacgacgatcccgacaccgacgccgtcatcatgatcggcgaaatcggc
ggccccgacgaagccgacgcggcccgctggtgcaaggaacacatgaagaagccggtggtc
ggcttcatcgccggtgtcaccgctcctcccggcaagcgcatgggccacgccggcgcgctg
atctcgggcggtgccgacacggccgatgccaagctcgccatcatggaagagtgcggcttc
accgtgacgcgcaacttctcggagctcgcaaagctgctcaaggcacagctctaa
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