Variovorax paradoxus B4: VAPA_1c54210
Help
Entry
VAPA_1c54210 CDS
T02835
Symbol
dbpA
Name
(GenBank) putative ATP-independent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpd03009
]
VAPA_1c54210 (dbpA)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VAPA_1c54210 (dbpA)
Ribosome biogenesis [BR:
vpd03009
]
Prokaryotic type
rRNA helicases
VAPA_1c54210 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGU52473
UniProt:
T1XIT1
LinkDB
All DBs
Position
1:5702018..5703454
Genome browser
AA seq
478 aa
AA seq
DB search
MTTSPSTAGGPQAQADHGFATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQ
AKTGSGKTAAFALALLSNLNPRRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTL
CGGVALRGQIASLEHGAHIVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDD
IVKVARQCPKERQTLLFSATYPEGIAKLAQQFMKSPQQITVQAQHEGSKIRQRWYQVKES
ERLHAVSLLLDHFRPVSTLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQ
FANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDSEIHIHRIGRTGRVGQQGGAEGLAL
NLASMDEMGSVGKIEQLQGRESEWHELAELTPAKGAPLAPPMATLQIVGGRKEKIRAGDV
LGALTGDCGYAKDQIGKINVNEFSTYVAVERAIAAEAARKLSSGRVKGKSVKVRLLEL
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatccccttccacagccggcggcccccaggcccaggccgaccacggctttgcc
acgctggcgctctcgccccagatgctggccaacctcacgcagctcggctacacgcagatg
acggcgatccaggcggccgcgctgccgccggcgctgctcggcaaggacctgatcgcgcag
gccaagaccggcagcggcaagaccgccgcctttgcgctggcgctgctttccaacctgaac
ccgcgccgcttcgccatccaggcgatggtgctgtgcccgacgcgcgaactggccgaccag
gtcacgaccgaaatccgccgcctggcgcgcgccgaggaaaacatcaaggtggtcacgctc
tgcggcggcgtcgcgctgcgcgggcagattgccagcctggagcacggcgcgcacatcgtg
gtgggcacgccgggccgcatcatggaccacctggagcgcgagaacctgaacctcgaggca
ctcaacacgctggtgctcgacgaagccgaccgcatgctcgacatgggcttcttcgacgac
atcgtgaaggtggcgcgccagtgccccaaggagcgccagacgctgctgttctcggccacc
taccccgaaggcatcgccaagctcgcgcagcagttcatgaagagcccgcagcagatcacg
gtgcaggcacagcatgaaggcagcaagatccgccagcgctggtaccaggtgaaggaaagc
gaacggctgcatgccgtgagcctcttgctcgaccatttccgccccgtgagcacgctggcc
ttctgcaacaccaagcagcagtgccgcgacctcgtcgaggtgctgcagggccagggcttc
agcgcgctggcgctgttcggcgagctggagcagcgcgagcgcgaccaggtgctggtgcag
tttgccaaccgcagctgctcggtgctggtggccaccgacgtggcggcgcgcgggctggac
atcgcgcagctcgaagccgtgatcaacgtcgacgtgacgcccgattccgaaatccacatc
caccgcatcggccgcaccggccgcgtgggccagcagggcggcgccgagggcctcgcgctg
aacctggccagcatggacgagatgggcagcgtcggcaagatcgagcagctgcagggccgc
gaatccgaatggcacgaactggccgagctcacgccggccaagggcgcaccgctcgcgccg
cccatggccacgctgcagatcgtgggcgggcgcaaggaaaagatccgcgccggcgacgtg
ctgggcgcgctgaccggcgattgcggctacgccaaggaccagatcggcaagatcaacgtc
aacgagttctcgacctacgtggccgtggagcgcgccattgcggccgaagcggcacgcaag
ctctcgagcggccgcgtgaagggcaagagcgtgaaagtgcgcctgctggagctctga
DBGET
integrated database retrieval system