KEGG   Variovorax paradoxus B4: VAPA_1c54210
Entry
VAPA_1c54210      CDS       T02835                                 
Symbol
dbpA
Name
(GenBank) putative ATP-independent RNA helicase DbpA
  KO
K05591  ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
Organism
vpd  Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vpd03009]
    VAPA_1c54210 (dbpA)
Enzymes [BR:vpd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     VAPA_1c54210 (dbpA)
Ribosome biogenesis [BR:vpd03009]
 Prokaryotic type
  rRNA helicases
   VAPA_1c54210 (dbpA)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_22 CMS1 P-loop_SecA ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AGU52473
UniProt: T1XIT1
LinkDB
Position
1:5702018..5703454
AA seq 478 aa
MTTSPSTAGGPQAQADHGFATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQ
AKTGSGKTAAFALALLSNLNPRRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTL
CGGVALRGQIASLEHGAHIVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDD
IVKVARQCPKERQTLLFSATYPEGIAKLAQQFMKSPQQITVQAQHEGSKIRQRWYQVKES
ERLHAVSLLLDHFRPVSTLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQ
FANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDSEIHIHRIGRTGRVGQQGGAEGLAL
NLASMDEMGSVGKIEQLQGRESEWHELAELTPAKGAPLAPPMATLQIVGGRKEKIRAGDV
LGALTGDCGYAKDQIGKINVNEFSTYVAVERAIAAEAARKLSSGRVKGKSVKVRLLEL
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgaccacatccccttccacagccggcggcccccaggcccaggccgaccacggctttgcc
acgctggcgctctcgccccagatgctggccaacctcacgcagctcggctacacgcagatg
acggcgatccaggcggccgcgctgccgccggcgctgctcggcaaggacctgatcgcgcag
gccaagaccggcagcggcaagaccgccgcctttgcgctggcgctgctttccaacctgaac
ccgcgccgcttcgccatccaggcgatggtgctgtgcccgacgcgcgaactggccgaccag
gtcacgaccgaaatccgccgcctggcgcgcgccgaggaaaacatcaaggtggtcacgctc
tgcggcggcgtcgcgctgcgcgggcagattgccagcctggagcacggcgcgcacatcgtg
gtgggcacgccgggccgcatcatggaccacctggagcgcgagaacctgaacctcgaggca
ctcaacacgctggtgctcgacgaagccgaccgcatgctcgacatgggcttcttcgacgac
atcgtgaaggtggcgcgccagtgccccaaggagcgccagacgctgctgttctcggccacc
taccccgaaggcatcgccaagctcgcgcagcagttcatgaagagcccgcagcagatcacg
gtgcaggcacagcatgaaggcagcaagatccgccagcgctggtaccaggtgaaggaaagc
gaacggctgcatgccgtgagcctcttgctcgaccatttccgccccgtgagcacgctggcc
ttctgcaacaccaagcagcagtgccgcgacctcgtcgaggtgctgcagggccagggcttc
agcgcgctggcgctgttcggcgagctggagcagcgcgagcgcgaccaggtgctggtgcag
tttgccaaccgcagctgctcggtgctggtggccaccgacgtggcggcgcgcgggctggac
atcgcgcagctcgaagccgtgatcaacgtcgacgtgacgcccgattccgaaatccacatc
caccgcatcggccgcaccggccgcgtgggccagcagggcggcgccgagggcctcgcgctg
aacctggccagcatggacgagatgggcagcgtcggcaagatcgagcagctgcagggccgc
gaatccgaatggcacgaactggccgagctcacgccggccaagggcgcaccgctcgcgccg
cccatggccacgctgcagatcgtgggcgggcgcaaggaaaagatccgcgccggcgacgtg
ctgggcgcgctgaccggcgattgcggctacgccaaggaccagatcggcaagatcaacgtc
aacgagttctcgacctacgtggccgtggagcgcgccattgcggccgaagcggcacgcaag
ctctcgagcggccgcgtgaagggcaagagcgtgaaagtgcgcctgctggagctctga

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