Variovorax paradoxus B4: VAPA_1c54810
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Entry
VAPA_1c54810 CDS
T02835
Name
(GenBank) putative guanine-specific ribonuclease N1/T1
KO
K01167
ribonuclease T1 [EC:
4.6.1.24
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c54810
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c54810
Enzymes [BR:
vpd01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.24 ribonuclease T1
VAPA_1c54810
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VAPA_1c54810
Transfer RNA biogenesis [BR:
vpd03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
VAPA_1c54810
Prokaryotic type
VAPA_1c54810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease
Motif
Other DBs
NCBI-ProteinID:
AGU52533
UniProt:
T1XIY8
LinkDB
All DBs
Position
1:5763895..5764305
Genome browser
AA seq
136 aa
AA seq
DB search
MAAYASITSSVTKFALTGLMLAALATGAEAREWFGPGKPAQESIALSDLPVQGQRTYEAI
LSGGPFRYEKDGTVFGNRERLLPPARRGHYREYTVATPGSRDRGARRIVCGGERRTTPEA
CWYTADHYASFRRIAP
NT seq
411 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttacgcctcgatcacgtcctctgtcactaagtttgcgctcaccggcttgatg
ctggcggcgttggcgacgggggccgaggcccgcgaatggttcggccccggaaagcccgcc
caggaatcgatcgcactgtccgacttgccggttcagggccagcgaacctacgaagccatc
ctgagtggcggccccttccgatacgaaaaggacggcacggtatttggcaaccgcgagcgt
ctcttgccgcccgcgcggcgcggtcactaccgcgagtacacggtggcaacgcccggctcg
cgcgatcgcggtgcacggcgcattgtctgcggcggtgaacggcgcaccacacccgaggcc
tgctggtacacggcagaccactacgcgagtttcagacggattgcaccatga
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