Variovorax paradoxus B4: VAPA_2c00680
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Entry
VAPA_2c00680 CDS
T02835
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase RfbB
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00521
Streptomycin biosynthesis
vpd00523
Polyketide sugar unit biosynthesis
vpd00525
Acarbose and validamycin biosynthesis
vpd00541
Biosynthesis of various nucleotide sugars
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01250
Biosynthesis of nucleotide sugars
Module
vpd_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
VAPA_2c00680 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
VAPA_2c00680 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
VAPA_2c00680 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
VAPA_2c00680 (rfbB)
00525 Acarbose and validamycin biosynthesis
VAPA_2c00680 (rfbB)
Enzymes [BR:
vpd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
VAPA_2c00680 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
3Beta_HSD
adh_short
Motif
Other DBs
NCBI-ProteinID:
AGU52632
UniProt:
T1XIC8
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All DBs
Position
2:72492..73574
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AA seq
360 aa
AA seq
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MILVTGGAGFIGANFVLDWLAHSDEPVVNLDKLTYAGNLETLASLKGDPRHIFVQGDIGD
SALVDRLLAEHKPRAIVNFAAESHVDRSIHGPEDFVQTNVLGTFRLLESVRGHWSAQPAE
QKAAFRFLHVSTDEVYGSLSKTDPAFTEENKYEPNSPYSASKAASDHLVRAWHHTYGLPV
LTTNCSNNYGPFHFPEKLIPLMIVNALAGKPLPVYGDGMQVRDWLYVKDHCSAIRRVLEA
GQLGETYNVGGWNEKPNIEIVHTVCALLDELRPRADGQPYKAQISYVTDRPGHDRRYAID
ARKLERELGWKPAETFDSGIRKTVEWYLAHGEWVRNVQSGAYRAWVEKQYDAAPAAQAAA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgatcctggtaaccggcggcgcgggcttcatcggcgccaacttcgtactcgactggctg
gcgcacagcgatgagcctgtcgtgaatctcgacaaactgacctacgccggcaacctcgag
acgctcgcgtcgctcaagggcgacccgcggcacatcttcgtgcagggcgacatcggcgac
agcgccctggtcgatcgcctgctggccgagcacaagccgcgcgccatcgtgaactttgcc
gcggaatcgcacgtggaccgctccatccacggccccgaagacttcgtgcagaccaacgtg
ctcggcaccttccgcctgctcgagtccgtgcgcggccactggagcgcgcagccggccgag
cagaaggccgccttccgcttcctgcacgtgtccaccgacgaggtctacggctcgctctcc
aagaccgaccccgccttcaccgaagagaacaagtacgagcccaacagcccctactcggcc
agcaaggccgccagcgaccacctcgtgcgcgcctggcaccacacctacggcctgccggtg
ctcaccaccaactgctccaacaactacgggcccttccacttccccgagaagctcattccg
ctgatgatcgtcaacgccctggccggcaagcccctgcccgtgtacggcgacggcatgcag
gtgcgcgactggctctacgtgaaggaccattgcagcgccatccgccgcgtgctcgaagcc
ggccagctcggcgagacctacaacgtcggcggctggaacgagaagcccaacatcgagatc
gtccacaccgtctgcgccctgctcgacgaactgcgcccccgtgccgacggccagccctac
aaggcgcagatcagctacgtcactgaccgccccggccacgaccgccgctacgccatcgac
gcgcgcaagctcgagcgcgaactcggctggaagcccgccgaaaccttcgacagcggcatc
cgcaagaccgtcgagtggtacctggcccacggcgaatgggtgcgcaacgtgcaaagcggc
gcctaccgcgcatgggtcgagaagcaatacgacgccgcacccgcggcccaggcggcggca
tga
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