Variovorax paradoxus B4: VAPA_2c01980
Help
Entry
VAPA_2c01980 CDS
T02835
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpd03000
]
VAPA_2c01980
Transcription factors [BR:
vpd03000
]
Prokaryotic type
Helix-turn-helix
Other families
VAPA_2c01980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_lid_14
AAA_5
HTH_30
AAA_2
HTH_17
PAS
HTH_20
HTH_7
HTH_1
HTH_22
PAS_8
HTH_IclR
AAA
HTH_23
AAA_3
HTH_28
UBA_HOIP
HTH_psq
HTH_Tnp_ISL3
Phage_NinH
PAS_9
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AGU52760
UniProt:
T1XKV4
LinkDB
All DBs
Position
2:complement(192251..194200)
Genome browser
AA seq
649 aa
AA seq
DB search
MQTNFHHVAARTPGSRLREARRQLTTTGEVADGLIDAALRRSWERSRGFGLAPVGRAPGA
PHASAAQLARALEQQRELASHARPVMEFLFEQMRDTDSLVILADAQGMLLEAMGDANFAD
RAQRVALRPGANWHERWRGTNAIGTALADASPVVVHAGEHYLDRNGFLTCTAAPITGPDG
RVLGVLDISGDHRGHHRHALALVRLAVRTVEQKLFDTRHAANLRLRLHLQPEGIGSVTEG
LLALSDDGWLVGANAAALAMLGLSRADVGAATIEQMLQLDLPTLMAWCRQPGGAPRTVRR
HDGSALWLRAEAGRHVLVAAHEAGPARRPAETRADALAELDTGDPAMRAAVERARRVLDK
PISWLLLGASGVGKEVFARALHASGTRREAPFVAVNCAALPEQLIEAELFGYRPGAFTGA
SREGAIGRIREAHGGTLLLDEIGDMPLALQARLLRVLQDRQVTPLGGGKPVAVDFRLVCA
THRNLRREIEAGRFREDLYYRLNGLTLQLPSLCERQDLPHLVARMLRGIEPDRELQLAPD
LALAMSRYRWPGNLRQLNSALHTACALLADHEAQIDWWHLPDDLADELREISTQAPAMPA
ADTADLKTLSDRTVSQAVQSCAGNLSEAARRLGISRNTLYRKLRQLPPG
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaatttccaccacgtcgccgcccgcacgccaggctcgcgcctgcgcgaagcg
cgccgccagttgacgaccaccggcgaagtggccgatggcctcatcgatgccgcgttgcgc
cgaagctgggagcgcagccgcggcttcggcctggcgccggtcggccgcgcgccgggcgcg
ccccacgcctccgcggcgcagctggcacgcgcgctcgagcagcagcgcgaactggcctcc
catgcgcggccggtgatggagttcctgttcgagcagatgcgcgacaccgacagcctggtg
atcctcgccgacgcgcagggcatgctgctcgaggccatgggcgacgcgaattttgcggac
cgcgcccagcgcgtggcgctgcgcccgggcgccaactggcacgagcggtggcgcggcacc
aatgccatcggcaccgcgctggccgatgcgtcgccggtggtggtgcatgccggcgagcac
tacctcgaccgcaatggctttctcacctgcacggccgcaccgatcaccgggcccgatggc
cgcgtgctgggcgtgctcgacatctcgggcgaccaccgcggccaccatcgccatgcgctg
gcgctggtgcggcttgccgtgcgcacggtcgagcagaagctgttcgacacgcgccacgcc
gccaacctgcggctgcgcctgcatctgcagcccgagggcatcggcagcgtgaccgaaggc
ctgctggcgctgtcggacgacggctggctggtgggcgccaatgcggccgcgctcgcgatg
ctgggcctgtcccgcgccgacgtgggcgccgcaacgatcgagcagatgctgcaactggat
ttgccgacgctgatggcctggtgccgccagccgggcggcgcgccgcgcacggtgcgccgg
cacgacggcagcgcgctctggctgcgggccgaggccggtcgccatgtgctggtggctgcc
cacgaggctggcccggctcggcgtccggcggaaacgcgcgccgatgcactggccgaactg
gacaccggcgacccggccatgcgcgccgcggtcgagcgcgcccggcgcgtgctggacaag
ccgatctcctggctgctgctcggcgcctccggcgtcggcaaggaggtgttcgccagggcg
ctgcatgccagcggaacgcgccgggaggctccgttcgtcgcggtcaattgcgccgcgctg
ccggagcagctgatcgaggccgagctcttcggctaccggcccggcgccttcaccggcgcg
agccgcgaaggcgcgatcggccgcatccgcgaggcgcacggcggcacgctgctgctcgac
gagatcggcgacatgccgctcgcgctgcaggcgcggctgctgcgcgtgctgcaggaccgg
caggtgacgccgctgggcggcggcaagccggtggcggtggacttccgcctggtgtgcgca
acgcaccgcaacctgcgccgcgagatcgaggccgggcgcttccgcgaagacctgtactac
cggctcaacggactgaccctccagctgccgtcgctgtgcgagcggcaggacctgccgcac
ctggtggcgcggatgctgcgcggcatcgagcccgaccgcgaactgcagctggcaccggac
ctcgcactcgccatgtcgcgctaccgctggcccggcaatctgcgccagttgaacagcgca
ctgcacaccgcctgcgccctgctggccgaccacgaggcgcagatcgactggtggcacctg
cccgacgacctggccgacgaactgcgcgagatttccacgcaagcgccggccatgcccgca
gccgacacggcggacctgaaaaccctctcggaccgcacggtgtcgcaggcggtgcagtcg
tgcgccgggaacctctccgaagccgcgcgccggctgggaatcagccgaaacacgctctac
cgcaaactgcgccagctgccgcccggctga
DBGET
integrated database retrieval system
