Variovorax paradoxus B4: VAPA_2c02120
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Entry
VAPA_2c02120 CDS
T02835
Name
(GenBank) RHS family protein
Organism
vpd
Variovorax paradoxus B4
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
RHS
DUF6531
TEN_YD-shell
NfeD1b_N
Motif
Other DBs
NCBI-ProteinID:
AGU52774
UniProt:
T1XKE2
LinkDB
All DBs
Position
2:complement(205882..210756)
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AA seq
1624 aa
AA seq
DB search
MADQAPQNDAQAKERERQTAVAPLNTIGEEDIGAGAAKIDKWLRKLTNDYVTLNVLATFA
GSLPVIGNIMALIDAVWDLIEMVTKKAYSDVLQWVSLAINLLGVIPFPPATGAARMSLRP
MLHLLKQEIAKSAKNAVPNIGEAFIAVLITHLNDTIAGTLDKFVDEALGYLDDFLQSCAK
KVDGIADALIGALQVALGEKPVFATGAAAERNTYDPKTQSTWSRMMAAAAEAAKKSANYA
AATASHYALPDSAKAMIRDTVASLTDLKGAARRQIMRLGDESLQYGIKWMIKILKDALLR
RKGKHSANISANNGTQVESKKPGGEQAATSAQVPAGGDPGCKNCTNAAAGGAISLATGCE
SFDHTDFVLGAPLPITWTRTYRSDLAAFDQGSLGARWITPYSTRVDVAKPAKGRRQGQMS
LIYRGADGRSHAFPLLAVGQSHRNPIEEITLTRLGERLLAVDFGKPMPAGQAPDWRETYE
LVDTVPAKAAAQGKQHFRLVAQHTNSGAAVGLRYDHVIAATGEQVLSDIISRQGEAIIAH
VGTQPDAQTGLIKALWELKEGRVVRQLAAYTHDAEGDLVAAQDENGAGWQYSYNHHLVTR
YTDRTGRGMNLQYDGTGADAKAVREWSDDGSFALTLEWDKNIRLTYLTDAMGGETWYYYD
VLGYTYRIIHPDKREEWFLRDDAKNITRHIHTDGTTDDYVYDANGNLKTHTRADGSSVHY
AYDARHRITGILDAEGGAWKRDYDASGNLTEEIDPLGHKTEYAYDNAGRPVRITDARGGI
KTLAYTPDGQLASHTDCSGKTTQWAYDGRGRLARITDALGQATRFRYAEAGEAAQSAMPG
QANHPGQLEEIVHPDNASEYFAHDAEGRLLAHTDALGRRTSYGYTRAGLVAQRTDAAGHT
LKYHWDLLGRLRELHNENGSRYDFRYDPVGKLLEETDFDRKATEYRYEPTTGVLAEVVEA
GHAIQLQFDALGRLSERQAGDDAERFAYDRNGRLVEATNAEARLQWFYDRAGNLVREHQH
YLDHGHTAVWQHGYDELNQRIASIRPDGHVTQWLTYGSGHVHGLLVDGQDILGFERDDLH
REIGRDQGNGLTQKLRYDPAGRLLEQQISQTRPGAIEAVGIRRSYHYDKAGQLTAIGDSR
RGNLSYRYDPVGRLLEAHSRLGRETFAFDPAGNIGHPSDTDINAQPAGRVTTRVAVRLNG
DGRSMAGRLMDNLLKDYAGTHYKWDERGNLIERSRNGEITTFTWDGFNRMRSAETFGETT
SFSYDALGRRIAKRSSHATTLFGWDGDTLAFESTQSTEDQQELQAWRGDSVHYIHEPGSF
VPLVQIRQAQAVELSETTDVKALIAANGGRYDIEQDPLWNGQQLRTPTAFAKEEIAFYQC
DHLGTPQELTDHEGRIAWSAQYKAWGEAKQAISEAGRKAGFRNPIRFQGQYFDDETGLHY
NRYRYYDPAAGRFVSSDPIKLRGGLNLHQFAPNPVNWIDPLGLSPINSCPCECERILAEE
GVVTGKHGDLKKIGGLQDSHHIYQDAAMKNIGGYDYNAAPAISLQGRNPDGTTRGTPHYG
ANRAQDNASQAGLLGSETVVAYNSLKAAGLSPAAAKCATLQARGYFKSIGAGAGTSTTTP
LKRR
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaggccccccagaacgacgcgcaagccaaggagcgcgagcgccagaccgcg
gtggcaccgctcaacaccatcggcgaggaagacatcggcgccggcgccgccaagatcgac
aagtggctgcgcaagctcaccaacgactacgtcacgctgaacgtgctcgcgaccttcgcg
ggcagcctgccggtcatcggcaacatcatggcgctcatcgacgcggtctgggacctcatc
gagatggtcaccaagaaggcgtacagcgacgtgctgcagtgggtgagcctggccatcaac
ctgctgggcgtgatcccgtttccgcccgccaccggcgcagcgcgcatgagcctgcggccc
atgctgcacctgctcaagcaggagatcgccaagtcggccaagaacgcggtgccgaacatc
ggcgaggcgttcatcgccgtgctcatcacgcacctgaacgacaccatcgccggcacgctc
gacaagttcgtggacgaggcgctcggctatctcgacgacttcctgcagtcctgcgcaaaa
aaggtcgacggcatcgccgatgcgctgatcggcgcgctgcaggtggcgctgggcgagaag
ccggtgttcgcgaccggcgccgctgccgagaggaacacctacgaccccaagacccagagc
acctggagccgcatgatggccgccgcggccgaggccgcgaagaaatccgccaactacgcg
gcggccaccgcgagccactatgcgctgcccgacagcgccaaggccatgatccgggacacc
gtcgccagcctgaccgacctcaagggcgcggcccgccggcagatcatgcggctgggcgac
gagagcctgcagtacggcatcaagtggatgatcaagatcctcaaggatgcattgctcagg
cgcaagggaaagcacagtgccaacatttccgcgaacaacggaacgcaggtcgagagcaag
aagcctggcggcgaacaggccgctacctccgcccaggtgccggccggcggcgaccccggc
tgcaagaactgcacgaacgccgccgcgggcggcgccatcagcctggccaccggctgcgag
agcttcgaccacaccgacttcgtgctcggcgcccccctgcccatcacctggacgcgcacc
taccgcagcgatcttgccgccttcgaccagggcagcctcggcgcgcgctggatcacgccc
tacagcacgcgcgtggacgtcgccaagcccgccaagggccgccgccagggccagatgagc
ctgatctatcgcggtgccgatggccgcagccacgccttcccgctgctggccgtggggcag
agccatcgcaacccgatcgaggagatcaccctcacccgcctcggcgaacggctgctcgcg
gtcgatttcggcaagcccatgccggccggccaggcccccgactggcgcgaaacctacgag
ctggtcgacaccgtgcccgccaaggccgccgcgcagggcaagcagcacttccggctggtg
gcgcagcacacgaacagcggcgccgccgtcggcctgcgctacgaccacgtgatcgcggcc
accggcgagcaggtgctcagcgacatcatcagcaggcagggtgaggccatcatcgcccac
gtcggcacccagcccgacgcgcagaccggcctcatcaaggccctgtgggagctgaaggaa
ggccgcgtcgtgcgccagctggccgcctacacccacgacgccgaaggcgacctcgtcgcc
gcgcaggacgagaacggcgccggctggcagtacagctacaaccatcacctcgtcacccgc
tacaccgaccgcaccggccgcggcatgaacctgcaatacgacggcaccggcgccgatgcc
aaggccgtgcgcgaatggtccgacgacggcagctttgcgctcacgctcgagtgggacaag
aacatccgcctcacctacctgaccgacgccatgggcggcgagacctggtactactacgac
gtgctgggctacacctaccggatcatccacccggacaagcgcgaggaatggttcctgcgc
gacgacgccaagaacatcacgcgccacatccacaccgacggcaccaccgacgactacgtc
tacgacgccaacggcaacctcaagacccacacccgcgccgacggcagcagcgtgcactac
gcctacgacgcgcgccaccgcatcaccggcatcctcgacgccgaaggcggcgcctggaag
cgcgactacgacgcaagcggcaacctcaccgaagagatcgacccgctcggccacaagacc
gaatacgcctacgacaacgccgggcgccccgtgcgcatcaccgatgccaggggcggcatc
aaaaccctcgcctacacccccgacggccagctggccagccacaccgactgctccggcaag
accacccagtgggcctacgacggccgcggccgcctggccaggatcaccgacgccctgggc
caggccacccgctttcgctacgccgaagccggcgaagccgcgcagtccgcgatgcccggc
caggccaaccacccgggccagctcgaggagatcgtccaccccgacaacgccagcgagtat
ttcgcgcacgacgccgagggccgcctgctcgcgcacaccgacgcgctgggccgccgcacc
agctacggctacacccgcgccggcctcgtggcccagcgcaccgatgcggccggccacacc
ctcaagtaccactgggacctgctgggccgcctgcgcgagctgcacaacgagaacggcagc
cgctacgacttccgctacgaccccgtcggcaagctgctcgaagaaaccgacttcgaccgc
aaggccaccgaataccgctatgagcccaccaccggcgtactcgccgaagtcgtcgaagcc
ggacacgcgatccagctgcaattcgacgccctgggccgcctgagcgagcgccaggccggc
gacgatgccgagcgcttcgcctacgaccgcaacggccgcctggtcgaggccaccaacgcc
gaggcccggctccagtggttctacgaccgcgcgggcaacctcgtgcgcgagcaccagcac
tacctggaccacggccacacggcggtctggcagcacggctacgacgagctcaaccagcgc
atcgccagcatccgccccgatggccacgtcacccaatggctcacctacggctccggccac
gtgcacggcctgctcgtggacggccaggacatcctgggcttcgagcgcgacgacctgcac
cgcgagatcggccgcgaccagggcaacgggctgacgcagaagctgcgctacgacccggcc
ggccggctgctggagcagcagatctcgcagaccaggccgggagcgatcgaggctgtcggc
atccgccgcagctaccactacgacaaggccggccagctcaccgccatcggcgacagccgc
cgcggcaacctgagctaccgctacgacccggtggggcgcctgctggaagcccacagccgc
ctgggccgcgagaccttcgcgttcgatccggcgggcaatatcggccacccgtccgacacc
gacatcaatgcgcagcctgccggccgcgtcaccacccgtgtcgcggtgcgcctgaacggc
gatggccgcagcatggccggccggttgatggacaacctgctcaaggactatgcgggcacc
cactacaagtgggatgagcggggcaacctgatcgagcgcagccgcaacggagaaatcacc
accttcacctgggacggcttcaaccgcatgcgcagcgccgagaccttcggtgagaccaca
agcttcagctacgacgcgctgggccggcgcatcgccaagcgaagctcacacgcgacgacc
ttgttcggctgggacggcgacacgctggccttcgagagcacgcaaagcaccgaggatcag
caagagctgcaggcctggcgcggcgacagcgtgcactacatccatgagcccggctccttc
gtgccgctggtgcagatcaggcaggcccaggccgttgagctgagcgagaccaccgacgtg
aaggcgttgatcgccgccaacggcgggcgctacgacatcgagcaggatccgctatggaac
gggcagcagctcaggacgccaactgccttcgcgaaggaagagatcgcgttctaccaatgc
gaccacttgggcacgccgcaggaactgacggaccatgaggggcggatcgcctggtctgcg
cagtacaaggcctggggtgaagccaagcaggcgatcagcgaagcgggccggaaggcgggg
ttcaggaatccgattcggttccaggggcagtactttgacgacgagacggggctgcactac
aaccggtatcggtattacgacccggcggcggggaggtttgtcagtagcgatccaatcaag
ttgagaggaggcttgaaccttcatcagtttgctcccaatccggtgaactggatcgatccg
ctggggctttcaccgatcaattcatgcccctgtgaatgcgaacgaatcctcgcagaagag
ggcgtagtaacaggcaagcacggggatctcaagaagattggaggtctccaagactcgcat
cacatctatcaagatgcagccatgaaaaatatcggtggctatgactacaacgctgctcca
gcaattagtttgcaggggcgcaatcccgatggaacaacgcgaggcacccctcactacgga
gccaatcgggcgcaagacaatgcgtcgcaggcaggactcttgggtagcgagacagtagta
gcctacaactcactgaaagcggcaggactgagccccgcagctgcaaaatgcgcaacgttg
caagcacgcggatatttcaaatccattggagcgggcgcaggaacatccacaaccactcca
ctgaagaggagatga
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