Variovorax paradoxus B4: VAPA_2c03530
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Entry
VAPA_2c03530 CDS
T02835
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAPA_2c03530 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_2c03530 (groL)
03110 Chaperones and folding catalysts [BR:
vpd03110
]
VAPA_2c03530 (groL)
03029 Mitochondrial biogenesis [BR:
vpd03029
]
VAPA_2c03530 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpd04147
]
VAPA_2c03530 (groL)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VAPA_2c03530 (groL)
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VAPA_2c03530 (groL)
Chaperones and folding catalysts [BR:
vpd03110
]
Heat shock proteins
HSP60 / Chaperonin
VAPA_2c03530 (groL)
Mitochondrial biogenesis [BR:
vpd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VAPA_2c03530 (groL)
Exosome [BR:
vpd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VAPA_2c03530 (groL)
Exosomal proteins of other body fluids (saliva and urine)
VAPA_2c03530 (groL)
Exosomal proteins of breast cancer cells
VAPA_2c03530 (groL)
Exosomal proteins of colorectal cancer cells
VAPA_2c03530 (groL)
Exosomal proteins of bladder cancer cells
VAPA_2c03530 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF465
Motif
Other DBs
NCBI-ProteinID:
AGU52914
UniProt:
T1XKS6
LinkDB
All DBs
Position
2:complement(354791..356419)
Genome browser
AA seq
542 aa
AA seq
DB search
MTAKQLLFREEARDKIRRGVDALAEAVKVTLGPRGRTVIIDSEYGPPQIVNSGVVVARAV
ELEDRFENMGAQLLREVAARTSEMAGDGTTTATVLAHAMIQEGLKYLAAGMNPMDLKRGI
DLAVAAVVDELKALSQPCTSSQEIAHVAAISANNDRSIGDLIARAMDKAGREGAVSIEDG
SGLVSELEIVEGMQFDRGFLSPYFINNAEKQTVLLENALVVLCDQRLSTINDLVPLLEAA
AKSGDPLLVIAEDVDADALATLVINSMRGVVKTCAVKAPGFGDRRKLLLQDMGILTGGQV
ISTELGLSLAKATLDHLGRARRVVIDKDSTTLIGGAGEPQAIRDRIAAIRQEREAQTSEY
ERTQLDQRIAKLSGGVAVIKVGAATETELKERKLRVEDALHATRAAVEEGIVPGGGVALL
RARRSLGQLASPTIDHGSGIKIVQRALEEPLRRIVGNAADEPSIVLARVDEAAQSSYGYN
AATREYGDMLEMGVIDPAKVTRLALQNAASIASLILTTDCMIAIAAKKEAPDAQRGAGGD
LY
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaagcaattgctctttcgtgaagaggcccgcgacaagatccgccgcggcgtg
gatgccctggccgaggcggtgaaggtcacgctgggcccgcgcgggcgcaccgtgatcatc
gacagcgagtacggcccgccgcagatcgtcaactccggcgtggtcgtcgcccgggcggtc
gagctggaggaccggttcgagaacatgggcgcgcagctgctgcgcgaagtggcggcccgc
accagcgagatggcgggcgacggcaccaccaccgccaccgtactggcccacgcgatgatc
caggaagggctgaaatacctggctgcgggcatgaaccccatggacctcaagcgcggcatc
gatctcgcggtcgcggcggtggtggacgagctgaaggcgctctcgcaaccctgcacgagt
tcgcaggagatcgcgcacgtggccgcaatctcggccaacaacgaccgctcgatcggcgac
ctcatcgcccgcgcgatggacaaggcgggccgcgagggcgcggtctccatcgaggacggc
tcggggctcgtcagcgagctggagatcgtcgaggggatgcagttcgaccgcggcttcctg
tcgccctacttcatcaacaacgccgagaagcagaccgtgctgctggagaacgccctggtg
gtgctgtgcgaccagcggctgtcgacgatcaacgacctcgtcccgctgttggaagccgcg
gcgaagtcgggcgacccgctgctcgtgatcgccgaggacgtggatgcggatgccctggcc
acgctggtgatcaacagcatgcgcggcgtcgtgaagacctgcgcggtcaaggcgccgggc
ttcggcgaccggcgcaagctgctgctgcaggacatgggcatcctgaccggcgggcaggtg
atctcgaccgagctgggcctgagtctggcgaaggccacgctcgaccacctgggccgtgca
cgccgcgtcgtcatcgacaaggacagcaccacgctgatcggcggcgcgggcgaaccgcag
gccatccgcgaccggatcgccgcaatccgccaggagcgggaggcgcagaccagcgaatac
gagcgcacgcagctggaccagcgcatcgcgaagctctcgggcggcgtggcggtgatcaag
gtgggcgccgcgaccgagaccgagttgaaggagcgcaagctccgggtcgaggacgcgctg
cacgccacgcgggcggccgtggaggaaggcatcgtcccgggcggcggcgtggcgctgctg
cgggcacgcaggagcctcggacagcttgcctcgcccaccatcgaccacgggtcggggatc
aagatcgtccagcgcgcgctggaggagcccctgcgccgcatcgtcggcaacgcggccgac
gagccctccatcgtgctggccagggtcgacgaggcggcccagtcgagctacggctacaac
gcggcgacccgcgagtacggcgacatgctggagatgggcgtcatcgatcccgccaaggtg
acgcgcctggccctgcagaacgccgcatcgatcgccagcctgatcctgaccaccgactgc
atgatcgccatcgccgcgaagaaggaagcgcccgatgcgcagcgcggcgccggcggcgat
ctctattga
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