KEGG   Variovorax paradoxus B4: VAPA_2c04110
Entry
VAPA_2c04110      CDS       T02835                                 
Symbol
polX
Name
(GenBank) putative DNA polymerase/3'-5' exonuclease PolX
  KO
K02347  DNA polymerase (family X)
Organism
vpd  Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpd03400]
    VAPA_2c04110 (polX)
DNA repair and recombination proteins [BR:vpd03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerase
    VAPA_2c04110 (polX)
SSDB
Motif
Pfam: HHH_8 DNA_pol_B_thumb HHH_5 PHP DNA_pol_lambd_f Cdd1 DNA_pol_B_palm
Other DBs
NCBI-ProteinID: AGU52971
UniProt: T1XK87
LinkDB
Position
2:complement(412962..414722)
AA seq 586 aa
MPIANADVAAVFNEIADLLELQGASIFRIRAYRNAARMLGDLGRSIQAMVEHGEDLDALP
GIGADLAAKIVGIVNTGSCPLLNQLRAQGPPGVVELLRIPGIGPRRARTLQLALGIRTLE
DMQRAISDGRLGTVRGFGPKTQQRIRESIAAHQQADRRFRLPMAMQVAEARLASLAAEPG
VLQAQAAGSLRRRRDTVGDIDLVVAAGPGSSVTRRFAAAADVATVLAKGATRAGVVLANG
MQVDLRAVPPESFGAALLYFTGSKSHNIALRQRARNAGLKLNEYGVFREDRRIAGDTEAS
VYRALGLPFIEPELREDRGEIEAALANGLPALVTLDDLRGDLHAHTRDSDGLDTLAAMAR
AARARGWQYMAVTDHSSRLALAHGLDAGRLAQQIDRIDALNARHDGFVVLKGVEVDILKD
GSLDLPEDVLRRLELVVGAVHSAFDLPRDRQTDRLLRAMDHPCFSILAHPTGRLIGERPP
CEIDLQRVIRKARERGCFLELNAQPMRLDLNDIACRMAREEGVRISIASDAHSTLDFDHL
RYGIGQARRGWLEPGDVLNTRSLDALRPLLAATMDRVSHDTPSPAV
NT seq 1761 nt   +upstreamnt  +downstreamnt
atgccgatcgccaatgccgacgtggcggcggtgttcaacgagatcgccgatctgctcgaa
ctgcagggcgccagcatctttcgcattcgtgcctaccgcaatgccgcgcgcatgctcggt
gacctgggccgcagcatccaggccatggtggagcatggcgaggacctcgacgccctgccc
ggcatcggcgccgacctggcggccaagatcgtcggaatcgtgaacacgggcagttgtccg
ctcctgaaccagttgcgcgcgcaggggccgcccggcgtggtcgagctgctgcggattcca
ggcatcggacctcgccgcgcgcgcacgctccagctggcactcggcatccgcacgctcgag
gatatgcaacgtgcaatttccgatggccgactgggcacggttcgcggcttcggtccgaag
acgcagcagcgcatccgggaatccattgccgcgcaccagcaggcggatcggcggttcagg
ttgcccatggccatgcaggtggccgaggcgcggctcgcaagcctcgcggccgaaccgggc
gtgttgcaggcgcaagccgcaggcagcctgcggcggcggcgcgataccgtgggcgatatc
gatctggtcgtggccgccggacccggcagttccgtgacgcgccgctttgccgccgcggcc
gacgtcgccaccgtcctcgccaagggcgcgacccgtgcgggcgtggtgcttgcgaacggc
atgcaggttgacctgcgtgccgtgccgccggagagtttcggcgcagccctgctgtatttc
accggctccaagagccacaacatcgccctgcggcaacgcgcgcgcaatgcgggcctgaag
ctcaacgagtacggcgttttccgggaagaccgccgcatcgcgggggacaccgaagcctcg
gtctaccgggcgctcggcctgcccttcatcgagcccgaactgcgcgaggaccgcggcgag
atcgaggccgccctggccaacggcctgcccgcactggtgacgctcgacgatctgcgcggc
gacctccatgcccacacgcgagacagcgacggcctggacaccctggccgcgatggcgcgg
gctgcccgcgcacgcggctggcagtacatggccgtcaccgatcattcctcgcggcttgcg
ctcgcgcatggcctggatgcgggccggctcgcgcaacagatcgatcgcatcgatgcgctc
aatgcccgccacgacggcttcgtggtgctcaagggcgtggaggtcgatatcctcaaggac
ggcagcctcgacctgcccgaggacgtgctgcggcgcctcgaactcgtcgtcggcgccgtc
cattccgcgttcgacctgccgcgcgaccggcagaccgatcgcctcctgcgcgccatggac
cacccttgcttcagcatcctggcccatcccaccggccgcctgatcggggagcgaccgccc
tgcgagatcgatctccagcgggtgatccgcaaggcccgcgagcgcggctgcttcctcgaa
ctcaacgcccagcccatgcggctcgacctgaacgacatcgcctgccggatggccagggaa
gaaggcgtgcggatcagcatcgcttccgacgcgcacagcacgctcgatttcgaccacctg
cgttacggcatcggccaggcacgccgcggctggctggaacccggcgacgtgctcaacacc
cgcagcctcgatgcgttgcggccgctcctggccgcgaccatggaccgggtctcccacgac
accccctcccccgcggtctga

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