Variovorax paradoxus B4: VAPA_2c05090
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Entry
VAPA_2c05090 CDS
T02835
Name
(GenBank) putative hemaglutinin
KO
K21449
trimeric autotransporter adhesin
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_2c05090
Transporters [BR:
vpd02000
]
Other transporters
Pores ion channels [TC:
1
]
VAPA_2c05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YadA_stalk
YadA_head
ESPR
Motif
Other DBs
NCBI-ProteinID:
AGU53069
UniProt:
T1XLA8
LinkDB
All DBs
Position
2:complement(511699..517734)
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AA seq
2011 aa
AA seq
DB search
MNKSYRSIWNEALGAWVAASETTRTRGKRGSSRVAIAAAAGVLGLLSISAQAQAVNCNVA
PWNAYNGTASCMGLNSSATGTGATALGALATATTGGGLAVGYNSLSAQLNAISVGFQAYT
AGINSIYLGARSIAGTGALANSTIAIGQDVTSSADSAIAIGTQAKSSALYATAIGIRATA
TGQAAVALGEDANAQSANSVAIGLEATTSGSTGAVAIGARSTTSGVNATAIGVGANATDT
NAFAAGTNAAATALRSVAIGAGATASDDAAVALGNSARALGNSSLALGAQAVAVGASTVA
VGQGAGAGSTIANTGSAAVGIAAGTLVSGALNTAMGGGIASVMRGAGSGVTGTRNVAFGS
GDGTVAYDATLAASAGNLVSGDDNVAIGTNAGIGVAGNATTSIGLNANASANRATAIGSK
ANASALDAIAQGTNTSAAGRNAIAIGFQAIASEINSINLGARTVAGTGATAAEVIAIGTD
VTASQERAVAMGRTSRATGVDAVAIGTRTNAAADYATALGSGGTTAATAVRATGIGAVAL
GGNATAGALASGANAIAIGGESVADADDAVAIGHGSIATGGRAVSIGSGNVASGDGAVAI
GDPNTATGNGAIASGLDNTATGNGSVAMGNTNMVGGGGQAVSTPGTAAQGAVGIGYQNTV
IGQGSVAIGSTSSALAAGAVAFGDTAVANNANDVALGSGSTTTTAVGTPNAVIGGVTYNF
AGTTPASTVSVGAVGAERTITNVAAGRLSDTSTDAINGSQLYATNQQVTANTTNIATNTA
SITNINNTIGDINNGGGIKYFHANSTLPDSQALGTDSVAIGPNAVANNAGDIALGAGSTT
TTTVGTASAVIGGTTYNFAGTTPTSTVSVGAAGAERTITNVAAGRISDTSTDAINGSQLF
ATNQQVTTNTTNIATNTANITTIGDTLNDINNGAGIKYFHANSTLPDSQAIGTDSVAIGP
NAVANNAGDIALGSGSTTTAAVGTANAVIGGTTYNFAGTTPVSTVSVGAVGAERTITNVA
AGRLSDTSTDAVNGSQLHATNQQVTANTTEITNINNGGGIKYFHANSTLPDSQALGTDSV
AIGPDAVANNAGDIALGSGSTTTTAVGTPNAVIDGTTYNFAGTTPTSTVGVGAVGAERTI
TNVAAGRLSDTSTDAINGSQLYATNQQVTANTTQITNLGDTIGDINNGAGIKYFHANSTL
PDSQAIGTDSVAIGPNAVANNAGDIALGAGSTTITAVGTANAVIGGTTYNFAGTTPLSTV
SVGGVGAERTITNVAAGRLNANSTDAVNGSQLHATNQQVTANTTEIDNINNTIGDINNGG
GIKYFHANSTLPDSQALGTDSVAIGPNAVANNPGDIALGSGSTTTAAVGTANAVIGGTTY
NFAGTTPVSTVSVGAVGAERTITNVAAGRLSNTSTDAINGSQLFATNQQTTANTTEITNL
NNTIGDINNGGGIKYFHANSTLPDSQALGTDSVAIGPNAVANNANDVALGAGSTTTTAVG
TANAVIGGTTHNFAGTTPVSTVSVGAVGAERTITNVAAGRLDANSTDAINGSQLFATNQQ
VTADTTEITNINNTIGDINNGGGIKYFHANSTLPDSQALGTDSVAIGPNAVATNANDVAL
GAGSTTVAAVGTASTVINGTTYSFAGTTPASTVSVGSVGAERTITNVAAGRISGSSTDAI
NGSQLFATNQSIENLSTTVTANKIRYYSVNSTGGGNEDNLGATGADAIASGKDASATVAG
AVAIGSGAVSDRFVAPSTGTIPAGSSLISYNTTDRALLGALSLGSATSYRQITNVADGTQ
AQDAVTVRQLSGALMSFAVTPTLYFHANSSAADSLAIGAESVAVGPQTVVNGNNGIGIGN
GAVVQQSAPGGVAIGQGAISHMADSIALGTQSSAAAVQGVALGAGSSVTQAGGVALGAGS
VASTAAGVAGYVPPTATEAQRIAIGATTSTLAAVSVGDAANGQFRQITGVAAGSADSDAV
NVSQLRGVQGQVAVIDQSTVKYDTNPDGSIN
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atgaataagtcgtaccgcagcatctggaatgaggcattgggcgcctgggtggccgcgtcc
gaaaccacccgaacacgcggcaagcgtggttcaagtcgcgtggccatcgccgcggcggcc
ggcgtgctgggattgctgtcgatctcggcgcaggcgcaggcggtgaattgcaatgtggcg
ccttggaatgcctacaacggcacggcgtcctgcatgggcctcaactcctcggccacgggg
accggagccaccgcgctgggggctctggcgaccgccaccaccggcggcgggcttgcagtc
gggtacaactccttgagtgcccaactgaatgccatctctgtgggtttccaggcctataca
gcaggcatcaactccatctacctgggcgcgcgcagcattgccggcacaggcgcgctggcc
aacagcaccatcgcgattggccaggatgtgacctccagtgctgacagcgccatcgccatc
ggcacccaggccaaatccagcgcgctctatgccacagcgatcggcatcagggcaaccgcc
accggacaggcagcagtcgccctgggtgaggatgcgaacgcccagtctgcgaacagtgtt
gccattggtttggaagccaccacgtcaggttcgaccggtgcggttgcgatcggcgcccgc
tcgaccacgagtggtgtcaacgcgacagcgatcggggtcggcgcaaatgccacggacacc
aatgccttcgccgctggcaccaacgcggccgcgaccgcgctgcgcagcgtcgccattggc
gccggagcaacggcaagcgacgacgcagccgtcgccctcggcaacagcgcccgggcgctt
gggaacagttcgcttgcactcggagcgcaagcggtcgctgtcggggccagcacggttgcg
gtcggccagggtgccggcgcgggctcgaccatcgccaatacgggttcggccgctgtgggc
attgccgccgggacgctggtcagcggcgcgctgaacaccgccatggggggaggcattgcg
agcgtgatgcggggcgcgggttcgggcgtcacgggaacgcgcaacgtcgccttcggctca
ggcgatggcacggtcgcctacgatgccaccttggcggcttcggcaggcaacctggtcagc
ggcgacgacaatgtcgccatcggcaccaacgcaggcatcggcgtcgcgggcaatgcaacg
acgtcgatcggcctgaacgcgaatgcgagcgcgaacagggcgacagccatcggttccaag
gcaaacgcttccgcactggatgccatcgcgcaaggcaccaacaccagcgcagccggccgc
aatgccatcgccatcggcttccaggcgatcgcttcggagatcaactccatcaatcttggc
gcacgcacggtggcgggaacgggcgccaccgcggcggaagttatcgccattggcacggat
gtgacggcatcccaggaacgcgctgtcgcaatgggacgcacaagccgggcaaccggcgtg
gacgcggtggcgattggtacccggaccaatgcggctgccgactacgcgaccgcgctcggt
tcgggcggaaccactgccgcgacggccgtgcgcgccaccggcatcggcgcggtggcgctg
ggcggcaatgccaccgccggcgcccttgcatcgggtgcgaatgcgatcgccatcggcggc
gagtccgtcgccgacgcggatgacgccgtcgccatcggtcacggttccatcgccaccggc
ggtcgcgcggtttcgatcggctcgggcaacgtcgccagcggtgacggcgccgtggccatc
ggcgatcccaacactgcgaccggcaacggcgcgattgcctcgggcctggacaacaccgcc
accggcaatggttcggtggcgatgggtaacaccaatatggtcggcggcggcggccaagcg
gtgagcacccccggcaccgcggcgcagggcgcggtcggcatcggctaccagaacaccgtg
atcggccagggcagcgtcgcgatcggcagcaccagcagcgcgctcgccgcgggcgcggtg
gcgttcggcgacacggcggtggccaacaacgcgaacgacgtggccctgggttccggctcc
acgacgaccacggcggtcggcacgcccaatgccgtgatcggcggcgtcacctacaacttt
gccggcacgacgccggcttcgacagtcagcgtgggggccgtgggtgcggagcgcaccatc
accaacgtggcggcgggccggctttccgacacgtcgaccgacgcgatcaacggctcgcag
ctgtacgccaccaaccagcaagtgacggcgaacacgaccaacatcgcgaccaacacggcc
agcatcaccaacatcaacaacacgatcggcgacatcaacaacggcgggggcatcaagtac
ttccacgccaactcgacgctgcccgactcacaggcgctgggcacggactccgtcgccatc
ggcccgaacgcggtcgccaacaacgccggcgacattgcattgggcgccggctccacgacg
accacgacggtcggcaccgcgagcgccgtgatcggcggcacaacctacaacttcgccggc
accacgccaacgagcacggtgagcgtcggcgcggcgggtgcggagcgcaccatcaccaac
gtggcagccggccggatttccgacacctcgaccgatgccatcaacggttcgcagctgttc
gccaccaaccagcaggtgacgacgaacacgaccaacatcgcgaccaacacggccaacatc
accaccatcggtgacacgctcaacgacatcaacaacggcgcgggcatcaagtatttccat
gccaactcgacgctgcccgactcgcaagcgatagggacggactccgtcgccatcggcccg
aacgcggtcgccaacaacgccggcgacattgcgctggggtccggttccaccacgaccgcg
gcggtaggcacggccaatgccgtgatcggcggcacgacctacaacttcgcgggcaccacg
ccggtgagcacggtgagcgtgggtgcggtcggcgcggagcgcaccatcaccaacgtggca
gcgggccggctttccgacacctcgaccgatgcggtcaatggcagccagctgcacgccacc
aaccagcaggtaacggcgaacacgaccgagatcaccaacatcaacaatggcgggggcatc
aagtacttccacgccaactcgaccctgcccgactcgcaggcgctgggcacggattccgtg
gccatcggacctgacgcggtcgctaacaatgctggtgacatcgcgctgggctccggctcc
acgacgaccacggcggtcggcacacccaacgccgtgatcgacggtaccacctacaacttc
gcgggcacgacgccgacctcgacggtcggcgttggcgcggtgggcgccgagcgcaccatc
accaacgtggcggcgggccggctttcggacacttccaccgacgccatcaacggttcgcag
ctgtatgcgacgaaccagcaggtgacggcgaacaccacacagatcaccaacctcggcgac
accatcggcgacatcaacaacggcgcgggcatcaagtatttccacgcgaactcgacgctg
cctgactcgcaagcgatagggacggactccgtcgccatcggcccgaacgcggtcgccaac
aatgccggcgacatcgcgctgggcgctggctccacgacgatcacggcagtcggcacggcc
aacgccgtgatcggcggcaccacctacaactttgccggcacaacgccattgagcacggtg
agcgtgggtggggtgggcgccgagcgcaccatcaccaacgtggcggcgggcaggctcaat
gccaactcgaccgatgcggtcaatggcagccagctgcacgccaccaaccagcaggtgacg
gcgaacaccaccgagatcgacaacatcaacaacacgatcggcgacatcaacaatggcggg
ggcatcaagtacttccacgccaactcgacgctgcccgactcgcaggcgctgggcaccgat
tccgtggccatcggcccgaacgcggtcgccaacaaccccggggacattgcactggggtcc
ggttccaccacgaccgcggcggtaggcacggccaatgccgtgatcggcggcacgacctac
aactttgccggcaccacgccggtgagcacggtgagcgtcggtgcggtgggcgcggagcgc
accatcaccaacgtggcggcgggccgactttccaacacctcgaccgatgccatcaacggt
tcgcagctcttcgcaaccaaccagcaaaccacggcgaacacgaccgagatcaccaatctc
aacaacacgatcggcgacatcaacaatggcgggggcatcaagtacttccacgccaactcg
acgctgcccgactcgcaggcactgggcacggactccgtggccatcggcccgaacgcggtc
gccaacaacgccaacgacgtggcattgggtgccggctccaccaccaccacggcagtgggc
acagccaacgccgtgatcggtggcacgacccacaactttgccggcaccacgccggtgagc
acggtcagcgtcggtgcggtgggcgcagagcgcaccatcaccaacgtggcggcgggccgg
ctcgacgccaactcgaccgatgccatcaacggttcgcagctctttgccaccaaccagcag
gtgacggcggacacgaccgagatcaccaacatcaacaacacgatcggcgacatcaacaat
ggcgggggcatcaagtacttccacgccaactcgaccctgcccgactcgcaggcgctgggc
accgattccgtggccatcggcccgaatgcggttgccaccaacgcgaacgacgtggcgctg
ggcgccggctccaccacggtggccgcagtgggcacggccagcacggtgatcaacggcacg
acctacagcttcgccggcaccacgccggcgagcacggtcagcgtcggttcggtgggcgcg
gagcgcaccatcaccaacgtggcggcgggcaggatctcgggcagttcgaccgatgccatc
aacggctcgcagctgtttgccaccaaccagtcgatcgagaacctcagcaccacggtcacg
gccaacaagatcaggtactacagcgtcaactccacgggcgggggcaacgaggacaacctt
ggcgccacgggggccgacgccatcgcgtcgggcaaggatgccagcgcaacggttgccggc
gcggtggccatcggctcgggcgccgtgtccgaccgcttcgtggcgccctccaccggcacc
attccggcgggcagctcgttgatcagctacaacaccaccgaccgcgccctgctgggcgcc
ctgtccctgggcagcgccaccagctaccgccagatcaccaacgtggccgacggcacgcag
gcgcaggacgcggtcacggtgcgccagctctcgggcgcgctgatgtccttcgcggtcacg
ccgacgctgtacttccatgccaactcgagcgcggcggattcgctggccatcggcgcggag
tcggtggcggtgggcccgcagacggtggtcaacggcaacaacggcatcggcatcggcaac
ggcgccgtggtgcagcagagcgcgccgggcggcgtggcgatcggccagggcgcgatctcg
cacatggccgactccatcgcgctgggcacgcagtcgtcggctgcagccgtgcagggcgtg
gcgctgggtgcgggcagcagcgtgacgcaggccggcggcgtggcgctgggcgcgggctcg
gtggcctccaccgccgcgggcgtggccggctacgtgccgcccacggccaccgaggcgcag
cgcatcgccatcggcgccaccaccagcacgctggcggcggtgtcggtgggcgacgcggcc
aacggacagttccgccagatcaccggcgtggcggcgggctcggccgacagcgatgcggtc
aacgtctctcagctgcgcggcgtgcagggccaggtggcggtgatcgaccagtcgacggtc
aagtacgacaccaacccagatggctccatcaactaa
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