Variovorax paradoxus B4: VAPA_2c08520
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Entry
VAPA_2c08520 CDS
T02835
Name
(GenBank) putative 2-hydroxyacid dehydrogenase
KO
K00058
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:
1.1.1.95
1.1.1.399
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00260
Glycine, serine and threonine metabolism
vpd00270
Cysteine and methionine metabolism
vpd00680
Methane metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
vpd01230
Biosynthesis of amino acids
Module
vpd_M00020
Serine biosynthesis, glycerate-3P => serine
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
VAPA_2c08520
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VAPA_2c08520
00270 Cysteine and methionine metabolism
VAPA_2c08520
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpd04147
]
VAPA_2c08520
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.95 phosphoglycerate dehydrogenase
VAPA_2c08520
1.1.1.399 2-oxoglutarate reductase
VAPA_2c08520
Exosome [BR:
vpd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
VAPA_2c08520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-Hacid_dh_C
2-Hacid_dh
NAD_binding_2
KARI_N
AdoHcyase_NAD
Motif
Other DBs
NCBI-ProteinID:
AGU53408
UniProt:
T1XLD1
LinkDB
All DBs
Position
2:869979..870986
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AA seq
335 aa
AA seq
DB search
MRIVIPDDYQDCVRTLDCFGKLDGHEVRIFNDTVKSIDELAARFADAEAIVLTRERTRID
AALLERLPGLRLISQTGKLAGHVDLAACTARGVAVAEGSGAGSATAELTWALTLASRRRL
VEEATRLRQGRWQGHLGQQLGGQRLGVWSYGRIGRQVAAYGRTFGMKVWVWGREGSTSAA
RADGFEVAPSREAFFAQSDVISLHVRLNEHTRGMVSDEDLARMKTSALLVNTSRAELVAP
GALERALVAGRPGFAAVDVFEEEPVRPDEHPLLHLPNALCTPHIGYVERDNYERYFGIAF
DHVNAFAAGRLKEALNPSVLRPAGKREVQRPCSPG
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgtcattcccgacgactaccaggactgcgtccgcacgctcgactgcttcggc
aagctcgacgggcacgaggtccgcatcttcaacgacacggtgaagagcatcgatgaactc
gccgcgcgtttcgcggacgccgaggcgatcgtgctcacccgcgagcgcacgcgcatcgat
gcggcgctgctcgagcgcttgcccgggttgcgtctcatcagccagaccggcaagctggcg
ggccacgtcgatctggcggcctgcacggcccgcggcgtggcggtggcggaaggcagcggc
gcaggttcggccaccgcggaactgacctgggcgctgacgctggcaagccgccggcgcctg
gtcgaggaagccacgcgcctgcgccagggccggtggcaaggccacctgggccagcaactc
ggcggccagcgtctcggcgtgtggagctatgggcgcatcggccgccaggtggccgcctac
gggcgcacattcggcatgaaggtctgggtgtggggccgcgaaggctcgacttcggcggcg
cgcgcggacggcttcgaagtggcgccctcgcgcgaggccttcttcgcgcagagcgacgtg
atcagcctgcatgtgcggctcaacgagcacacccggggcatggtctcggacgaagacctg
gcccgcatgaagaccagcgccctgctggtgaacaccagccgcgccgagctggtcgcgccc
ggtgcgctggaacgcgcgctggtggcgggccggcccggcttcgcggccgtggacgtgttc
gaggaagagcccgtacgcccagacgagcatccgctcctgcatctgcccaacgcgctgtgc
acgccgcacatcggctatgtcgagcgcgacaactacgagcgctacttcggcatcgccttc
gaccacgtcaacgcgtttgccgcagggcgcttgaaggaggcgctcaacccctcggtcttg
cgcccggccggaaagcgtgaagttcagcggccctgcagtccaggttga
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