Variovorax paradoxus EPS: Varpa_0108
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Entry
Varpa_0108 CDS
T01392
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Varpa_0108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_0108
Transcription machinery [BR:
vpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Varpa_0108
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
Phage_antitermQ
HTH_29
HTH_11
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ADU34330
LinkDB
All DBs
Position
complement(109965..110489)
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AA seq
174 aa
AA seq
DB search
MSFPDTRLQPQLGDFYRAHHGWLTAWLRRKLGCAHSAADVAQDTFVRVLASRETLRMLGS
IEKPRAFLCTTAGRLLIDRARRQRIEQAYLAELALAMEGCAHPSPKETLMAMQALAQIAA
ALDGLQPKPREAFLLHYLDGMTHTAIAESLGVSDRMVRKYLALALLHCRVEFVQ
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttccccgatacccgcctgcagccccagttgggcgatttctaccgcgcgcaccac
ggctggctgaccgcctggctgcgccgaaagctgggctgcgcgcacagtgccgccgacgtg
gcgcaagacaccttcgtgcgcgtgctcgcctcgcgcgagacgctgcgcatgctgggcagc
atcgagaagccccgcgccttcctctgcaccacggccgggcgattgctgatcgaccgcgcg
cggcgccagcgcatcgagcaggcctacctggccgaactggcgctggcgatggaggggtgc
gcccatccctcgccgaaggaaacgctgatggcgatgcaggcgctggcccagatcgctgcc
gcgctcgacggcctgcagcccaagccgcgcgaagccttcctgctgcactacctggacggc
atgacgcatacggccatcgcagagagcctgggcgtatcggaccgcatggtgcgcaagtac
ctcgcgctggcgctgctgcattgccgcgtggagttcgtccagtga
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