Variovorax paradoxus EPS: Varpa_0252
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Entry
Varpa_0252 CDS
T01392
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_0252
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Varpa_0252
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
AAA_22
ChlI
AAA_16
Lon_C
DnaB_C
RecA
DUF7125
AAA_30
GvpD_P-loop
Rad51
NPHP3_N
SLFN-g3_helicase
NTPase_1
AAA_14
AAA_5
AAA_29
AAA_24
ATPase_2
nSTAND3
NACHT
DUF7129
Motif
Other DBs
NCBI-ProteinID:
ADU34474
UniProt:
E6V1B0
LinkDB
All DBs
Position
266307..267695
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AA seq
462 aa
AA seq
DB search
MAKDKTTFVCSECGGTSPKWLGKCPSCGAWNTLIEQVAGSNAPANNRFGTQFSPLAGVSE
LATLSEIEATDIARTPTGIDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDALQRA
GQNALYVTGEESGAQVALRSRRLGLDHSQVQVLAEIQLEKIIATLDATRPAIAVIDSIQT
VYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSQHAEPVPGSVVL
VTLEGTRPMLVEIQALVDNGGPSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNA
VGGVRISEPAADLAVMLAITSSLRGKPLPKGFIAFGEVGLAGEVRPAPRGQERLREAAKL
GFSIAVVPKANAPRKGSKEIEGLTIHPVERIEEAMDVVRRLD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggacaaaacgactttcgtctgcagtgaatgcggcggcaccagccccaagtgg
ctcggcaaatgcccgagctgcggtgcgtggaacacattgattgaacaggtggccggcagc
aacgccccggccaacaaccgcttcggcacgcagttctcgccgctggcgggcgtctccgaa
ctggcgacgctgtcggagatcgaggcgaccgacatcgcacgcacgcccaccggcatcgac
gaactcgaccgcgtgctgggcggcggcatcgtgtcgggcggcgtgacgctgatcggcggc
gacccggggatcggcaagtcgacgctgctgctgcaggcggtcgatgcgctccagcgtgct
gggcagaacgcgctctatgtgacgggcgaggaaagcggtgctcaggtcgcgctgcgctcg
cgccggctcgggctcgatcactcgcaggtgcaggtgctcgccgaaatccaactcgagaag
atcatcgccacgctcgacgccacgcggcctgcgatcgcggtgatcgactccatccagacg
gtgtactccgaccagctcacttcagcgccaggctccgtggcgcaggtgcgcgaatgcgcc
gcgcacctcacgcgttttgccaagaccagcggcacggccgtggtgctggtgggccatgtc
acgaaagagggcgcgctcgcaggcccgcgcgtgctggagcacatggtcgacacggtgctg
tatttcgaaggcgacacgcattcgagcttccgcctcgtgcgcgccatcaagaaccgtttc
ggcgccgtgaacgagatcggcgtgttcgcgatgaccgagcggggcttgaagggcgtggcg
aatccgagcgcgatcttcctgagccagcacgccgagccggtgcccggcagcgtggtgctg
gtcacgctggagggcacgcggccgatgctggtggaaatccaggcgctggtcgacaacggc
gggccgagcccgcggcgcctctcggtgggcctggaccgcgaccgtctcgcgatgctgctc
gcggtgctgcaccgccacgcgggcgtggcctgcatggaccaggacgtgttcgtgaacgcg
gtgggcggcgtgcgcatcagcgagcccgcggccgacctggccgtgatgctggccatcacc
tcgagcctgcgcggcaagccgctgcccaagggtttcatcgcgttcggtgaagtgggcctc
gccggtgaagtgcgtcccgcgccgcgtgggcaagaacgtctgcgcgaagccgccaagctg
ggcttcagcatcgcggtggtgcccaaggccaacgcaccgcgcaaaggttcgaaggagatc
gaaggcttgaccatccatcccgtcgaacgcatcgaagaggcgatggacgtggtccgccgc
ctcgattga
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