Variovorax paradoxus EPS: Varpa_0287
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Entry
Varpa_0287 CDS
T01392
Name
(GenBank) exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Varpa_0287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_0287
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Varpa_0287
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Varpa_0287
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Glyco_hydro_47
DUF5648
Motif
Other DBs
NCBI-ProteinID:
ADU34509
UniProt:
E6V1E5
LinkDB
All DBs
Position
complement(302714..303517)
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AA seq
267 aa
AA seq
DB search
MFKLTSLNLNGLRSAATKGVADWVAELAPDCICMQEIRVQASDIEGRFEEMAGLKGHFHF
AEKKGYAGTAIYTKHAPSQVIVGWGDAEFDAEGRYLELRFDTPKRKFSVISCYFPSGSSG
EERQLAKFRFLKGFFPHLVALKKEREFVLCGDINIAHQQIDLKNWRSNQKNSGFLPEERA
WMTKLLDAGAEGAGLVDVYRMLKPETTDEAYTWWSNRGQAYANNVGWRLDYHLATPKTAA
LARTEQIFKTIKFSDHAPITVDYDFTL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaaactgaccagtctcaatctcaatggcctgcgttcggcggccaccaagggcgtc
gccgattgggtggccgaacttgcgccggattgtatttgcatgcaggagatccgggtccag
gcgagcgacatcgaaggccgcttcgaggagatggcgggcctcaagggccacttccacttc
gccgagaagaaaggctatgccggcaccgcgatctacaccaagcacgcaccgagccaggtc
atcgtgggctggggcgatgccgagttcgacgccgagggccgctacctcgaactgcgcttc
gacacgcccaaacgcaagttctccgtcatcagctgctacttcccgagcggcagttcgggc
gaggagcggcaactggccaagttccgttttctcaagggcttcttcccgcacctggtggcg
ctcaagaaggagcgcgagttcgtgctgtgcggcgacatcaacatcgcgcaccagcagatc
gatttgaagaactggcgcagcaaccagaagaacagcggcttcctgcccgaggaacgcgcc
tggatgacgaagctgctggacgccggtgccgagggtgcgggcctggtggacgtctaccgc
atgctcaagcccgagaccaccgacgaggcctacacctggtggagcaaccgcggccaggcc
tatgcgaacaacgtgggatggcggctcgactaccacctggccacgccgaagaccgcggcg
ctcgcgcgcaccgaacagatcttcaagaccatcaagttcagcgaccacgcgccgatcacg
gtggactacgacttcacgctctga
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