Variovorax paradoxus EPS: Varpa_0315
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Entry
Varpa_0315 CDS
T01392
Name
(GenBank) extracellular solute-binding protein family 1
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_0315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_0315
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Varpa_0315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_6
SBP_bac_11
SBP_bac_1
Motif
Other DBs
NCBI-ProteinID:
ADU34537
UniProt:
E6V2A6
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All DBs
Position
complement(331459..332526)
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AA seq
355 aa
AA seq
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MSRTQKTFSLRRTLLGAAAVSLLAATGAASAQTKTLYIGMNGGTMEKAYTQYVFPAFEKL
YGAKVVVVPGTSSDILAKAQANKDRPQMHVMFLDDGIMVRAIGMGLCQKQKPNPSLAEIY
PAARFKDDMASGVSLGMTGLAYNAKMFKEKGWAAPTSWMDLADPKFKGKVVFQSMSSSSF
GLHGFLMFNRIQGGNDKNVEPGFKAWPTTVGPNVLEYIPSSAKLSEMVQTGEAAIFPLTP
TAVAALKTKGIPVEYAPPKEGAVVLMVGQCVIANNSEPELSQKLAEFLLSPLAQANVLQY
GAQIPTNPKAPAVGEGATQVADINKWMKTAITIDWESINANRPAWNSRWNKTIEK
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtacccagaagaccttttcccttcgccggaccctgctcggggcggcggcggtt
tccctgctcgcggccaccggcgcggccagcgcgcagaccaagacgctctacatcggcatg
aacggcggcaccatggagaaggcgtacacgcagtacgtgttcccggccttcgagaagctg
tacggcgcaaaggtggtggtggtgccgggcacctcgtcggacatcctcgcgaaggcacag
gccaacaaggaccgcccgcagatgcacgtgatgttcctggacgacgggatcatggtgcgc
gccatcggcatgggcctgtgccagaagcagaagcccaacccgtcgctcgccgagatctac
cccgccgcgcgcttcaaggacgacatggccagcggcgtgagcctgggcatgacgggcctg
gcctacaacgcgaagatgttcaaggaaaagggctgggccgcgcccacgtcgtggatggac
ctggccgatccgaagttcaagggcaaggtggtgttccagtcgatgtcgtcttcgtcgttc
gggctgcacggctttttgatgttcaaccgcatccagggcggcaacgacaagaacgtggag
cccggcttcaaggcctggccgaccaccgtcggccccaacgtgctggagtacatcccgagc
tcggccaagctctcggagatggtgcagacgggcgaagcggcgatcttcccgctcacgcca
actgcggtggccgcgctcaagaccaagggcattccggtggagtacgcgccgcccaaggaa
ggcgccgtggtgctgatggtgggccagtgcgtgattgccaacaacagcgagcccgagctg
tcgcaaaagctcgccgagttcctgctgagcccgcttgcgcaagccaacgtgcttcagtac
ggcgcgcagatcccgaccaacccgaaggcgccggccgtgggcgaaggcgcgacgcaggtg
gcggacatcaacaagtggatgaagacggcgatcaccatcgattgggagagcatcaacgcg
aaccggcccgcgtggaattcgcgctggaacaagacgatagagaagtag
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