Variovorax paradoxus EPS: Varpa_0420
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Entry
Varpa_0420 CDS
T01392
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00061
Fatty acid biosynthesis
vpe00071
Fatty acid degradation
vpe01100
Metabolic pathways
vpe01212
Fatty acid metabolism
vpe02024
Quorum sensing
vpe04146
Peroxisome
Module
vpe_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Varpa_0420
00071 Fatty acid degradation
Varpa_0420
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Varpa_0420
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_0420
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpe01004
]
Varpa_0420
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpe04147
]
Varpa_0420
Enzymes [BR:
vpe01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Varpa_0420
Lipid biosynthesis proteins [BR:
vpe01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Varpa_0420
Exosome [BR:
vpe04147
]
Exosomal proteins
Exosomal proteins of breast milk
Varpa_0420
Exosomal proteins of breast cancer cells
Varpa_0420
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
ADU34642
UniProt:
E6V3F2
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All DBs
Position
447720..449399
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AA seq
559 aa
AA seq
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MTDRPWLSSYPQGVPADIDASHYSSLVGLMEESFTKYADRTAYSFMGKDISYAETDKQSK
AFAAYLQGLGLAKGDRVAAMMPNCPQYPIAVAAILRAGLILVNVNPLYTPRELEHQLKDS
GAKAIVIMENFGTTLQQCIAATPIKHIVLTSMGDRLGFLKGALVNYVVRNVKKMVPHFSL
PGAVRFNDALDKGASRTLQAPTIGPDDVAVLQYTGGTTGVSKGAVLLHRNVIANVLQSEA
WNEPVMAQVPAGEQPTSVCALPLYHIFAFTVGMMLNMRTGGKLILIPNPRDLAGVLKELS
KHTIHSFPAVNTLFNGLANHPDFNTVNWKNLKVSVGGGMAVQAAVAKLWLEKTGCPICEG
YGLSETSPSTTCNPTNSKAYTGTIGLPLPGTWLKLLDDDGHEVPMGQPGEIAIKGPQVMA
GYWQRPDETAKVMTPDGYFKSGDIGVVDERGYFKVVDRKKDMILVSGFNVYPNEIEDVVA
QIPGVLECAAVGVVDDKTGEAVKLVIVKKDESLTEAQVSEYCRANLTGYKQPRIVEFRTD
LPKTPVGKILRRELRDAKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccgcccctggctcagcagctatccgcaaggcgtgcccgccgacatcgacgct
tcgcactattcatcgctggtcgggctcatggaagagagcttcaccaagtacgccgaccgc
accgcctacagcttcatgggcaaggacataagctacgcggagaccgacaagcagagcaag
gccttcgccgcgtacctgcagggcctgggcctcgccaagggcgaccgcgtggccgcgatg
atgcccaactgcccgcagtacccgatcgcggtggcggcaatccttcgcgcggggctgatc
ctggtgaacgtgaatccgctctacacgccgcgcgaactggagcaccagctcaaggattcg
ggcgccaaggccatcgtcatcatggagaacttcggcaccacgctgcagcaatgcatcgcg
gccacgccgatcaagcacatcgtgctcacctcgatgggcgaccgcctcggtttcctcaag
ggcgcgctggtcaactacgtggtgcgcaacgtcaagaagatggtgccgcacttcagcctt
ccgggcgccgtgcgcttcaacgatgcgctcgacaagggcgcgagccgcacgctgcaagcc
ccgaccatcggccccgacgacgtggccgtgctgcagtacaccggcggcaccaccggcgtc
tcgaagggtgcggtgctgctgcatcgcaacgtgatcgccaacgtgctgcagtccgaggcc
tggaacgaacccgtcatggcgcaggtgccggccggcgagcagcccaccagcgtgtgcgcg
ctgccgctgtatcacatcttcgcgttcacggtcggcatgatgctgaacatgcgcacgggc
ggaaaactgatcctgatcccgaatccgcgcgacctcgcgggcgtgctgaaggagctctcg
aagcacacgatccacagcttccccgcggtcaacacgctcttcaacggcctggcgaaccac
cccgacttcaacaccgtcaactggaagaacctcaaggtctcggtcggcggcggcatggcg
gtgcaggctgcggtcgcgaagctctggctcgagaaaaccggctgcccgatctgcgagggc
tacggcctctccgagacctcgccttcgaccacctgcaaccccacgaacagcaaggcctac
accggcaccatcggcctgccgctgccgggcacctggctcaagctgctcgacgacgacggc
catgaagtgccgatgggccagcccggcgaaatcgccatcaagggtccgcaggtgatggcg
ggctattggcagcgccccgacgaaaccgccaaggtcatgacgcccgacggctacttcaag
agcggcgacatcggcgtggtcgacgagcgcggctacttcaaggtggtcgaccgcaagaag
gacatgatcctggtgtcgggcttcaacgtgtacccgaacgagatcgaggacgtcgttgca
cagattccgggcgtgctcgaatgcgcggcggtgggcgtggtcgatgacaagaccggcgag
gccgtgaagctcgtgatcgtgaagaaagacgagtcgctcaccgaggcgcaggtgagcgaa
tactgcagagcaaaccttacgggttacaagcagccgcgaatcgtagagtttcgtacggac
ctcccgaaaacgccggtcggaaaaatcctccgccgcgaattgcgcgacgccaagaagtaa
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