Variovorax paradoxus EPS: Varpa_0429
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Entry
Varpa_0429 CDS
T01392
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03420
Nucleotide excision repair
vpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Varpa_0429
03430 Mismatch repair
Varpa_0429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_0429
Enzymes [BR:
vpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Varpa_0429
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Varpa_0429
MMR (mismatch excision repair)
Other MMR factors
Varpa_0429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
NACHT
AAA_12
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADU34651
UniProt:
E6V3G1
LinkDB
All DBs
Position
458738..460855
Genome browser
AA seq
705 aa
AA seq
DB search
MQTAAPPVISAAPKTQAERLAAALATLNDDQRAAVEHGVGAAVADDHRPLLVIAGAGSGK
TSTLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERRAGQVLAKVLGLKSERPPALPWAG
TFHGIGARLLREYAQQIGLDENFTIHDRGDAEDLMGLVRHELGLSSTVNRFPRKGTCLSI
YSRCVNTRASVAEVLKEAFPWCGEWEAELKTLFGAYVEAKQQQNVLDYDDLLLYWAEMVA
EPALAEAVGARFDHVLVDEYQDTNLLQASILLAMKPDGRGVTVVGDDAQSIYSFRGATVR
NILDFPSQFSREARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPQLV
LVPDEAGQARWVADKVLAHREGGLALKSQAVLFRTSSHSAALELELARRNIPFVKFGGLK
FLEASHVKDLLAVLRFAENPRGRMAGFRVTQLIPGIGPVTGTRLLDAMDQAADPAAAVRD
FVPPSAAREQWAGFAEAYAALRAPSLAWPADVELAMGWYLPHLERLYDDTSGVRRQDVEQ
LVRLAAGYGSRERFLTELTLDPPEATSDRPGPPLLDEDYLILSTIHSAKGQEWNSVHVLN
VVDGCLPADVAQSAHELEEERRLLYVAMTRARDHLHLLVPQRFYITQQAVRGDRHLYANR
TRFITESDLAGFEQQTWPPPPVQPPAVPPPAAVIDLRNRMRAAWR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccgctgcgccccccgtaatttccgctgcgccgaagacgcaagccgagcgcctt
gccgcggcgttggccacgctcaacgacgaccagcgcgcagccgtcgagcacggcgtcggc
gctgcggtggccgacgatcaccgcccgctgctggtgattgccggtgccggttccggcaag
accagcacgctggcgcatcgggtggcgcacctgatcgcggacggggtcgatccgcagcgc
ctgctgctgctgactttctcgcgccgcgccgcgcaggaaatggagcgccgcgcgggccag
gtgctggccaaggtgctcggcctcaagtcggaacgcccgcccgcgctgccgtgggccggc
acctttcacggcatcggggcgcggctcttgcgcgagtacgcgcaacagatcggactcgac
gagaacttcacgatccatgaccgcggcgatgccgaagacctgatggggctggtgcgccac
gagctgggcctgtcttccacggtcaaccgcttcccgcgcaagggcacgtgcctctcgatc
tattcgcgctgcgtgaacacgcgcgcctcggtggccgaggtgctgaaggaggccttcccc
tggtgcggcgaatgggaggccgagctcaagacgctgttcggcgcctacgtcgaagccaag
cagcagcagaacgtgctcgactacgacgacctgctgctctactgggccgagatggtcgcc
gagcccgcgctggccgaagccgtgggcgcgcgcttcgaccatgtgctggtcgacgagtac
caggacaccaacctgctgcaggcttcgatcctgctggcgatgaagcccgatgggcgcggc
gtcacggtggtgggggacgacgcgcaatcgatctactcgttccgcggcgcgacggtgcgc
aacatcctcgatttcccttcgcagttcagtcgggaggcgagggtggtcacgctggagcgc
aactaccgctcgacgcagccgatcctcgacgtatcgaaccgcgtgatcgcgcaggcggcc
gagcggcatgccaagacgctctggaccgacaagccctccgccggcaagccgcaactggtg
ctggtgcccgacgaggccgggcaggcgcgctgggtggccgacaaggtgctcgcgcaccgc
gagggcgggcttgcgctcaagtcgcaggcggtgctgtttcgcacctcgtcgcacagcgcg
gcgctcgaactggaactggcacgccgcaacatccccttcgtgaagttcggcgggctcaag
tttctcgaggcttcgcatgtgaaggacctgcttgccgtgctgcggtttgccgagaacccg
cgcgggcgcatggcggggtttcgcgtcacgcagctgattcccggcatcgggcccgtcacc
ggcacgcgcttgctcgatgcgatggaccaggcggccgatccggccgcggccgtgcgcgac
ttcgtgccgccgtccgcggcacgcgagcagtgggccgggttcgccgaggcctacgccgcg
ttgcgtgcgccgtcgctggcgtggccggccgatgtggagctggcgatgggctggtatctg
ccgcacctggagcggctctacgacgacacctccggcgtgcgccgccaggacgtggagcaa
ctggtgcgcctcgccgcgggctacggttcgcgtgagcgcttcctgaccgagctcacgctc
gatccgcccgaagccacgagcgatcgcccggggccgccgctgctcgacgaggactacctg
atcctctccaccatccattcggccaagggccaggaatggaactcggtacatgtgctcaac
gtggtcgacggctgcctgccggccgacgtggcgcagagcgcgcacgaactcgaggaagag
cggcgcctgctctacgtcgcgatgacgcgggcccgcgaccatctgcacctcctggtgccg
cagcgcttctacatcacgcagcaggcggtgcggggcgaccggcatctgtatgcgaatcgc
acgcgcttcatcacggaatcggatctcgctggcttcgagcagcagacctggccaccaccg
ccggttcagccgcccgcggtgcctccgcccgccgcggtgatcgacctgcgcaaccgcatg
cgcgcggcctggcgctga
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