Variovorax paradoxus EPS: Varpa_0532
Help
Entry
Varpa_0532 CDS
T01392
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Varpa_0532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_0532
Enzymes [BR:
vpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Varpa_0532
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Varpa_0532
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADU34753
LinkDB
All DBs
Position
573184..575793
Genome browser
AA seq
869 aa
AA seq
DB search
MGTTRTASTARKALSRYHGKRDFSRTPEPKEGGRAGQGVLSFVIQKHHASRLHYDFRLEL
DGTLKSWAVPKGPCLDPTVKRMAVHVEDHPISYADFEGTIPPKQYGAGTVIVWDRGDWLP
EGGSEADARKALAAGKLKFELRGEKLKGHWTLVRMRGKGDEKQEPWLLIKERDDAARDLA
DYDVLEEQPASVLTGRGLDEVDSPPKKAAPAKKAAAKKPEKKAAKKEVKKEVKKKAALPA
TLQPQLAVLAASPPSSPDDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTDKLPVIAKA
LAKLPTDSAWLDGEITVEGGNGAPDFQALQNAFDRGATSSIVYWLFDAPFLDGQDLRDEP
VEERRAHLARLLGKRPPATLRLSEAFDASPRDLLASSARIGFEGIVGKRKGSPYVSRRSA
DWIKLKNQQRQEFVIGGYTAPKGSRSGFGALLLGVHDDKGRLRYCGNVGTGFNADRLADI
KARLDRLATDDCPFKPMPDGANAKAQWVKPTLVAEVSFGEWTREDRVRQAVFQGLRTDKP
ARGIVRERAAPSETSPETSTEASTDTPAKKQGARKSMALKITHADRVIDAKSGITKGELA
AYYDAVGTLMLPHLRGRPVSLVRAPDGVGGELFFQKHIQNREIPGVNLLDPALDPGHEPL
LQIDSKTGLIGAAQMNVIELHTWNATSRAIDRPDRMTFDLDPGEGVGWPQIQEATLLVRT
LLDELGLPSFLKTSGGKGMHVVVPIRRQYGWDEVKGFSQAVVVHLAKTIPDRFVAKSGPR
NRVGKVFVDYLRNGFGATTVSAWSARSRPGLGVSVPVAWEELPALTGAAQWTVANVAERL
ATGNKPWAAMERSRKGIAAAMKMLDYKPA
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaacccgcaccgcatcgaccgcgcgcaaggcgctttcccgctaccacggcaag
cgcgatttctcgcgcacgccggagcccaaggagggcggccgcgcgggccagggcgtgctc
tccttcgtcatccagaagcaccacgcgagccgcctgcactacgacttccggctcgaactc
gacggcacgctcaagagctgggccgtgccgaaaggaccgtgcctcgatccgacggtcaag
cgcatggcggtgcatgtcgaggaccatccgatttcgtatgcggacttcgagggcaccatt
ccgccgaagcaatacggtgccggcaccgtcatcgtgtgggaccgaggcgactggctgccg
gaggggggtagcgaagccgacgcgcgcaaggcgctcgcggccggcaagctcaagttcgag
ctgcgcggcgaaaagctcaagggccactggacgctggtgcgcatgcgcggcaagggcgac
gagaagcaagagccgtggctgctcatcaaggagcgcgacgacgcggcgcgcgatcttgcc
gattacgacgtgctcgaagagcaacccgcgagcgtgctgaccggccgcggcttggacgag
gtggacagtccgccgaagaaggcggcgcccgccaaaaaggccgcggcgaagaagcccgag
aagaaagcggcaaagaaggaggtcaagaaggaggtcaagaagaaggccgccttgcccgcc
acccttcaaccgcagctcgcggtcctcgccgcttcgcctccgtcatcgcccgacgactgg
ctctacgaactcaagttcgacggctaccgcctgctcgcgcgcatcgacaagggcaaggtg
cgctgcttcacccgcaacggccatgactggaccgacaagctgcccgtcatcgccaaggcc
ctcgccaagctacccaccgattcggcctggctcgacggcgagatcaccgtggaagggggc
aacggcgcgcccgatttccaggcgctgcagaacgccttcgaccgcggtgcgacttcatcc
atcgtctactggctgttcgatgcgccctttctcgatgggcaggacctgcgcgacgagccg
gtcgaggagcgacgtgcgcacctggcccgcctgctcggcaagcggccaccggcgacgctg
cgcctgagcgaggccttcgatgcgtcgccgcgcgacctgcttgcgtcgtccgcgcgcatc
ggcttcgagggcatcgtcggcaagcggaagggctcgccgtacgtgtcgcgccgctcggcc
gactggatcaagctcaagaaccagcagcgccaggagttcgtgatcggcggctacaccgcg
cccaagggttcgcgctcggggttcggcgcgctgctgctgggcgtgcacgacgacaagggg
cggctgcgctattgcggcaacgtgggcaccggattcaacgcggatcggctcgccgacatc
aaggcgcggctggacaggctggccaccgacgactgtcccttcaagcccatgccggacggc
gcgaatgcgaaggcgcaatgggtcaagcccacgctggtggccgaagtctctttcggcgaa
tggacgcgcgaagaccgcgtgcgccaggcggtattccaggggctgcgcaccgacaagccc
gcgcgcggcatcgtgcgcgaacgggcggcgccttccgagacatcgcccgagacatcaacc
gaagcatcaaccgacacacccgcgaagaagcaaggagcaaggaaatccatggcgctgaag
atcacccacgccgaccgcgtgatcgatgcgaagagcggcatcaccaagggcgaactcgcc
gcctactacgacgcggtgggcacgctcatgctgccgcacctgcgcgggcggccggtgtcg
ctggtgcgcgcgcccgacggcgtgggcggcgagctgttcttccagaagcacatccagaac
cgcgagatacccggcgtcaacctgctggaccccgcgctcgatccgggccacgagccgctg
ctgcagatcgacagcaagaccgggctcatcggcgccgcgcagatgaacgtcatcgagctg
cacacctggaacgccacctcgcgcgccatcgaccggcccgaccgcatgaccttcgacctg
gaccccggcgaaggcgtgggctggccgcagatccaggaagcgacgctgctggtgcgcacg
ctgctcgacgaactgggcctgccgtcgttcctgaagaccagcggcggcaaggggatgcat
gtggtggtgccgatccgccggcagtacggctgggacgaggtcaaggggttctcgcaggcc
gtggtggtgcacctggcgaagacgattccggaccgcttcgtcgccaagagcgggccgcgc
aaccgcgtggggaaggtgttcgtggattacctgcgcaacggcttcggcgcgaccacggtc
agcgcgtggtcggcgcggtcgcgcccggggctgggcgtgtcggtgccggtggcgtgggag
gagttgcccgccctgaccggcgccgcgcaatggaccgtcgccaacgtggccgagcgcctc
gccacgggcaacaagccgtgggcggcgatggagcgcagccgaaaaggcatcgccgcggcg
atgaagatgctcgactacaaaccggcgtag
DBGET
integrated database retrieval system
