Variovorax paradoxus EPS: Varpa_0635
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Entry
Varpa_0635 CDS
T01392
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Varpa_0635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_0635
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Varpa_0635
DNA repair and recombination proteins [BR:
vpe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Varpa_0635
Prokaryotic type
Varpa_0635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ADU34856
LinkDB
All DBs
Position
707138..707845
Genome browser
AA seq
235 aa
AA seq
DB search
MNRPDQLSSSDPADWPVASGWQPLVDDFFAGVVGQKLLGFLRERLDAHAVIFPPQPLRAL
ELTPPEDVRVVILGQDPYHGRGQAEGLAFSVAPGVALPPSLRNIFKELQRDLGTAPPQFP
NPGGSLVKWATHGVLLLNTCLTVEEAQPASHSGRGWEVLTDAVIRHVSDGAKPVVFMLWG
SHAQSKRALIDVGRHKVLMSNHPSPLSALRPPVPFIGCGHFGEARAWREAHQEGG
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggccggatcagctgtcgagcagcgatcctgccgactggcctgtggcgtcgggc
tggcagccgctggtcgacgatttttttgcgggcgtcgtgggacagaaactgctcggcttc
ctgcgcgagcgcctcgatgcgcacgccgtgatctttccgccgcaaccgctgcgggcactg
gaattgacgccgcctgaagacgtgcgcgtcgtgatcctgggccaggacccgtaccacggt
cgcggacaggccgaaggactcgcgttctcggtcgcgcccggcgtggcgctgccgccgtcg
ctgcgcaacatcttcaaggaactccagcgcgaccttggcacggcgccgccgcagtttccg
aatccaggtggcagcctggtgaagtgggcgacgcatggcgtgctgctgctcaacacctgc
ctcacggtggaagaagcccagccggcgagccattcagggcggggttgggaagtgctgacc
gatgccgtcatccgacatgtatcagacggcgcaaaacctgttgtttttatgctgtggggt
tcgcatgcgcaaagtaagcgtgcgttgatcgatgttgggcgccacaaggtgctgatgtcg
aatcatccgtcgccactttccgcgttgcgtccgccggtgccgttcatcggatgcggtcat
ttcggcgaagcgcgagcttggcgggaagcgcatcaggaaggcggctga
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