Variovorax paradoxus EPS: Varpa_0644
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Entry
Varpa_0644 CDS
T01392
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Varpa_0644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_0644
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_0644
Enzymes [BR:
vpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Varpa_0644
Transcription machinery [BR:
vpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Varpa_0644
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Varpa_0644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADU34865
UniProt:
E6V6K2
LinkDB
All DBs
Position
717672..721901
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEFGDEFVAKM
GAEGIRDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPQWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEV
ELTAKVAVRITEYTKDKETGVFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIERSAKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RSAADDVLHPENRSVLLKAGEMFDEDNIEVLEAQGVDEVKVRTALTCETRFGICATCYGR
DLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIGFN
ATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLAVKADQQIKAGHVLANW
DPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DASGAEVKIPGTDHSVTIGFPIGSLVQIRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGGVYEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARRAKDAMDDAERRA
IAESEAAELAGSSSDATSTADASEGAATE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtctttcggtgaagtgaagaag
ccagagacgatcaactaccgcacgttcaagcccgagcgcgacggtctcttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcactcagaccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccatcgcgtctgggcctcgtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctatgtgatcaccgatccgggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactacgacgccaagcgcaaggaattcggcgatgaattcgttgccaagatg
ggcgccgaaggcatcagggatctgctcgaaggcatcgaactcgacagcgagatcgagcgc
ctgcgcggtgacctgaccggctccgaagtcaaggtcaagaagaactccaagcgcctgaag
gtgctggaagccttccgcaagtcgggcatcaagccccagtggatggttctcgaagtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaattcgcgtctgcgccgcctc
ttggagctgaaggctccggaaatcatcgcgcgcaacgaaaagcggatgctgcaggaggct
gtcgactcgctgctggacaacggccgccgcggcaaggccatgacgggcgccaacaagcgc
gcactcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacttg
ctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcactcgagctgttcaagcccttcatcttc
tcgcgcctcgaagccatgggcatcgcgaccacgatcaaggctgccaagaaggaagtcgaa
tcgggcacgccggtggtctgggacatcctggaagaagtgatcaaggaacacccggtcatg
ctgaaccgtgcgcctacgctgcaccgtttgggcatccaggcgttcgagccgatcctgatc
gaaggcaaggccattcagctgcacccgctggtttgcgccgccttcaacgccgacttcgac
ggcgaccagatggccgttcacgtgccgctgtcggtggaagcgcaaatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgaaccgtcgatcgttcct
tcgcaggacgtggtgctgggtctgtactacacgacccgcgaccgcatcaacggcaagggc
gagggcctgatcttctccgacatcggtgaagtgcagcgcgcgctggacgccaacgaagtc
gaactcaccgccaaggtggcagtgcgcatcacggaatacaccaaggacaaggaaaccggc
gtcttcacgccgtcgacctcgctcgtggacaccaccgtgggccgtgccctgctgtccgag
atcctgcccaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtctcgttccgcaagtgcggcctgaaagagaccgtcgtgttcgcc
gacaagctgctgcaaaacggcttccgcctggcgaccaaggccggtatctcgatcgcgatc
gacgacatgctggtgcccgccgagaagcacggcatcatcgagcgctccgccaaggaggtg
aaggagatcgaacagcagtacgtttccggtctcgtgacctccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtcgaaggtcatgatggccaagctc
tcgaagcagaaggtcatcgaccgccacggcaaggaagtcgagcaggagtcgttcaactcc
atctacatgatggccgactccggcgcccgcggttccgcagcgcagatccgccaggtggcc
ggcatgcggggcctgatggccaagccggacggctcgatcatcgagacgcccattaccgcg
aacttccgcgaaggcctgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctgaagacggcgaactcgggttacctgacccgtcgtctggtc
gacgtgacgcaagacttggtcgtgaccgagcaggactgcggtacgcatggcggctacctg
atgcgcgcgatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgaccgaatcctcggc
cgctcggctgcggacgatgtgctgcacccggaaaaccgctcggtgctgctgaaggccggc
gagatgttcgacgaagacaacatcgaagtcctggaagcccagggcgtcgacgaagtcaag
gtccgcaccgcgctgacctgcgaaacccgcttcggtatctgcgcaacctgctacggccgc
gatctgggtcgtggcggcctgatcaacatcggcgaagccgtcggtgtgatcgcggcgcag
tcgatcggcgaacccggcacgcagctgacgatgcgtacgttccacatcggtggtgcggca
tcgcgtgcggccatcgcttcgagcgtggaagccaagtcgaacggttcgatcggcttcaac
gccacgatgcgctacgtgaccaacagcaagggcgagctggtcgtgatttcgcgttcgggc
gagatcgtcattcatgacgagcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gcgaccctggccgtcaaggccgaccagcagatcaaggccggccacgtgctcgccaactgg
gacccgctgacgcgcccgatcattaccgagttcgccggcaagacgcagttcgagaacgtc
gaggaaggcctcacggtcgccaagcaggtggacgaagtgaccggcctgtcgaccctggtc
gtgatcgatccgaagcgccgcggcgctgccaaggtcgtgcgtccgcaggtgaagctcatc
gacgcctccggcgccgaagtgaagatcccgggcaccgaccactcggtgacgatcggcttc
ccgatcggctcgctggtgcagatccgcgacggccaggacgtgggccccggcgaagtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtt
gccgagctgttcgaagcgcgttcgccgaaggacaagggcatgctggccgaaatgaccggt
accgtgtcgttcggcaaggaaacgaagggcaagattcgcctgcagatcaccgatcccgaa
ggcggcgtctacgaagacctcgtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgagtcggtggtcgacggtccggcggacccgcaggacatcctgcgc
ctgctgggttcggaagaactggcgcgctacatcgtggacgaagtgcaggacgtgtaccgc
ttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgacaacatcggcgagaccggctacatctccggcgaacaggtcgaacgc
agcgaaatgctcaacaccaacgacgccctgcgcgccgaaggcaagatccccgcgacgttc
acgaacctgctgctgggtatcacgaaggcatcgctgtcgaccgactcgttcatctcggct
gcttcgttccaggaaacgacgcgcgtgctgaccgaagccgcgatcatgggcaagcgcgac
gaactgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattcccgcaggcaccggc
atggcttaccaccaggctcgccgggccaaggacgcgatggacgacgccgagcgccgcgcc
atcgccgaatcggaagccgccgaactggcgggttcctcgagcgatgcgacgagcacggcc
gacgccagcgaaggcgccgcgaccgaataa
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integrated database retrieval system
