KEGG   Variovorax paradoxus EPS: Varpa_0736
Entry
Varpa_0736        CDS       T01392                                 
Name
(GenBank) two component, sigma54 specific, transcriptional regulator, Fis family
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe02020  Two-component system
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Varpa_0736
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:vpe02022]
    Varpa_0736
Two-component system [BR:vpe02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   Varpa_0736
SSDB
Motif
Pfam: Sigma54_activat Response_reg AAA_lid_14 Sigma54_activ_2 HTH_8 AAA_5 AAA_16 Mg_chelatase FleQ HTH_30 AAA AAA_22 nSTAND6 AAA_2 ResIII AAA_32 AAA_3 AAA_7
Other DBs
NCBI-ProteinID: ADU34954
LinkDB
Position
828425..829786
AA seq 453 aa
MSEAPAIRVMLVEDDEDVRLSTTQVLTLAGFEVEAFNSAERARSHISFGVPAIVVCDVRL
PGLSGTEWLPQLHAADAELPVILVTGHGHIAMAVQAMREGAYDFIEKPFSSERLVAIVRH
AIERRQLSLQVRALRDALENWNGIQSVLIGRSAQMQLVRRTVMTLAETSADVLIYGETGT
GKELIARCLHDHSERRRQHFVPLNCGGLPEALAESELFGHEAGAFTSANRVRVGKFEYAN
GGTLFLDEIESMPMPVQIKLLRALQERSIERIGSNKAIPFDCRVVAASKDDLKEMSDRQK
FRADLYYRLGVAFIELPPLRERREDIPLLFEHFTLLAASRYERAAPLLTSAQLADLMAYA
WPGNVRELRNVADRFVLGLPGERLTQARGTGEGLPALPRALPQQVEAFERAVIVEALRKH
QGDQPATATALAIARQTLHDKLRKLGIAAEEFK
NT seq 1362 nt   +upstreamnt  +downstreamnt
gtgagcgaagcccctgccatccgggtgatgctggtcgaggacgacgaagacgtccgcctc
agcacgacccaggtgctgaccctggccggtttcgaggtcgaagccttcaacagcgccgag
cgcgcgcgcagccacatcagcttcggcgtgccggccatcgtggtctgcgacgtgcgcctg
ccgggcctgagcggcaccgagtggctgccccagttgcatgccgccgatgccgagctgccc
gtgatcctggtcaccggccacggccacatcgcaatggcggtgcaggcgatgcgcgaaggc
gcctacgacttcatcgagaagcccttcagctccgagcggctggtggcgatcgtgcgccac
gccatcgagcgccggcagctctcgctgcaagtgcgtgcgctgcgcgatgcgctggagaac
tggaacggcatccagtcggtgctgatcggccgctcggcgcagatgcaactggtgcgccgc
accgtgatgacgctggccgagacctcggccgacgtgctcatctacggcgagaccggcacc
ggcaaggaactcatcgcgcgctgcctgcacgaccacagcgagcgccggcgccagcacttc
gtgccgctcaactgcggcggcctgcccgaggcgctggccgagagcgagctcttcggccac
gaggccggcgccttcaccagcgccaaccgcgtgcgcgtgggcaagttcgaatacgccaac
ggcggcacgctttttctcgacgagatcgagagcatgccgatgccggtgcagatcaagctc
ctgcgcgcgctgcaggagcgcagcatcgagcgcatcggctccaacaaggcgattcctttc
gactgccgcgtggtggccgcgagcaaggacgacctgaaggaaatgagcgaccgccagaag
ttcagggccgacctgtactaccgcctgggcgtcgccttcatcgagctgccgccactgcgg
gagcgccgcgaagacattccgctgctgttcgagcacttcacgctgctggccgcgagccgc
tacgagcgcgcggcgccgctgctcaccagcgcccaactggccgacctgatggcctacgcc
tggccgggcaatgtgcgcgaactgcgcaacgtggccgaccgcttcgtgctgggactgcct
ggcgagcgcctcacgcaggcgcgtggaacgggtgaaggcttgcctgcactgccgcgcgcg
ctgccgcagcaggtcgaggccttcgagcgcgcggtgatcgtcgaggcgctgcgcaagcac
cagggcgaccagccggccacggccaccgcactggcgattgcgcgccagacgctgcacgac
aagctgcgcaagctggggatcgcggcggaggagttcaagtag

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