Variovorax paradoxus EPS: Varpa_1072
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Entry
Varpa_1072 CDS
T01392
Name
(GenBank) binding-protein-dependent transport systems inner membrane component
KO
K02054
putative spermidine/putrescine transport system permease protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_1072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_1072
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Varpa_1072
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BPD_transp_1
Motif
Other DBs
NCBI-ProteinID:
ADU35290
UniProt:
E6UVQ7
LinkDB
All DBs
Position
complement(1195236..1196486)
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AA seq
416 aa
AA seq
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MTADGATCPTAAARGLKSDLRRASRRHRTKALLLIAPLALFLLLTFLVPIGALLSRSVVD
TEVAEILPTVSARLQSWNGTALPDDAVFAALATDVRAARSAGRLASAATRLNYDVNGFRS
LMFSTARRLPDGPLEPSAREVLVGIDPKWGELDTWGALARAKGPATSLFVLGALDLRSSP
GGGVEAMPPDQAVFVPILWRTLSIAGGVTLACLLFGYPLAYLLASLPERKANLLMICVLL
PFWVSLLVRTTAWVVLLQNEGVVNSALLQFHLIKEPLAMLYTRFAVYAAMVHVLLPFVVL
PLYAVMKSIPPSHMRAAGSLGATPWTAFRRVYLPQTLPGVGAGGLMVFIQALGYYITPAL
VGGAGDQMISYFIAFYATKTINWGMAAALSLLLLMATTVLYAAYARLVGVDRMKAA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcagacggcgcgacctgtccgacggccgccgccaggggcctgaagagcgatctg
agacgggcttcccgccgtcaccgcacgaaggccctgctcctgatcgcgccgctcgcactg
ttcctcctgctcacgttcctcgtgccgatcggcgccctcttgagccgatccgtcgtggac
accgaagtggccgagatcctgccgacggtgtctgcacggctgcagtcgtggaacgggacc
gcgttgccggacgacgccgtgttcgccgccctggcaaccgacgtgcgcgcggcgcgcagc
gccggccggctcgcgtcggccgccacgcgcctgaactacgacgtgaacgggttccgctcg
ctgatgttctccacggcccggcgcctgccggacgggccgttggagcccagtgcgcgcgag
gtgcttgtcggcatcgatccgaaatggggcgagctcgatacctggggagccctggcgcgt
gccaagggtcccgcgacttcgctgttcgttctcggcgcgctcgacctgcgttcgtcgccg
ggcggcggcgtcgaagcgatgccgccggaccaggcggtcttcgtgccgatcctctggcgc
accttgtcgattgcgggcggcgtcacgttggcctgcctgctgttcggctatccgctggcg
tacctgctggccagcctgcctgagcgcaaggcgaacctgctgatgatctgcgtgctgctg
cctttctgggtctcgctgctcgtgcgaacgaccgcctgggtcgtcctgttgcagaacgag
ggcgtcgtgaactcggccttgctccagttccacctcatcaaagagccgctcgcgatgctc
tacacgcgctttgcggtctacgcggcgatggtgcacgtgctcctgccgttcgtcgtgctg
ccgctctacgcagtgatgaagagcattccgccctcgcacatgcgggccgccgggtcgctg
ggcgcgacgccctggacggcgtttcgccgcgtgtacctgccgcagacactcccgggcgtg
ggcgccggcggcctgatggtgttcatccaggcgctgggctactacatcacgccggcgctg
gtcggcggtgccggggaccagatgatcagctacttcatcgccttctacgcgaccaagacc
atcaactggggcatggccgcggcgctgtctctgctgctgctcatggcgaccactgttctc
tatgcggcctacgcgcgcctcgttggcgtcgacaggatgaaagcggcatga
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