Variovorax paradoxus EPS: Varpa_1366
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Entry
Varpa_1366 CDS
T01392
Name
(GenBank) extracellular solute-binding protein family 1
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_1366
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_1366
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Varpa_1366
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_6
SBP_bac_8
SBP_bac_11
SBP_bac_1
Motif
Other DBs
NCBI-ProteinID:
ADU35582
UniProt:
E6V0H8
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All DBs
Position
complement(1521786..1522799)
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AA seq
337 aa
AA seq
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MSLRISRIARLGLIAATFVAAGSVMAQTAICYNCPTEWADWGTQLKAIKAKTGVTVPADN
KNSGQSLAQLVAEKASPVADVTYLGVTFAVQAAKDGVVEPYKPAAWKDIPDGLKDPAGNW
FTIHSGTLGFMVNVDALKGKPVPKSWADLLKPEYKGLIGYLDPASAFVGYVGAVAVNQAR
GGTLDNFTPGIDYFKALQKNEPIVPKQTSYARVLSGEIAILLDYDFNAYRAKYKDKANVA
FVIPSEGTLVVPYVMSLVAKAPHAADAKKVLDFTLSDEGQAIWAKAYLRPVRASAMPKEI
EAQFLPASEYARAKSVDYGRMAEAQRAFSDLYLKEVR
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccgtatctcccgcatcgcccgcctcgggctgatcgccgccaccttcgttgcc
gcaggcagcgtcatggcccagaccgccatttgctacaactgcccgaccgaatgggccgac
tggggcacgcagctcaaggccatcaaggccaagacgggcgtcaccgtgccggccgacaac
aagaactcgggccagtcgctcgcgcaactggtcgccgagaaggcaagccccgtggccgac
gtcacctacctgggcgtgaccttcgccgtgcaagccgcgaaggacggcgtggtcgagccc
tacaagccggcggcgtggaaagacatccccgacggcctcaaggacccggccggcaactgg
ttcaccatccattcgggcaccctcggcttcatggtcaacgtcgatgcgctcaagggcaag
cccgttcccaagtcgtgggccgacctgctcaagcccgaatacaagggcctcatcggctac
ctcgaccccgcctcggccttcgtcggctacgtgggtgcggtggcggtcaaccaggcgcgc
ggcggcacgctggacaacttcacgccgggcatcgattacttcaaggcgctgcagaagaac
gagccgatcgtgccgaagcagacctcgtacgcacgcgtgctgtcgggcgaaatcgcgatc
ctgctggactacgacttcaacgcctaccgtgccaagtacaaggacaaggccaacgtcgcc
ttcgtcatcccgagcgaaggcacgctggtcgtgccctacgtgatgagcctggtcgccaag
gcgccgcatgcggccgacgcgaagaaggtgctcgacttcacgttgtccgacgaaggccag
gcgatctgggccaaggcgtacctgcgcccggtgcgcgcgagcgcgatgcccaaggagatc
gaggcgcagttcctgcccgcgagcgaatacgcgcgtgccaagagcgtggactacggccgc
atggccgaagcgcagcgcgcgttctccgacctgtacctcaaagaggtgcgctga
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