KEGG   Variovorax paradoxus EPS: Varpa_1543
Entry
Varpa_1543        CDS       T01392                                 
Name
(GenBank) ribonuclease III
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    Varpa_1543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpe03019]
    Varpa_1543
   03009 Ribosome biogenesis [BR:vpe03009]
    Varpa_1543
   03036 Chromosome and associated proteins [BR:vpe03036]
    Varpa_1543
Enzymes [BR:vpe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     Varpa_1543
Messenger RNA biogenesis [BR:vpe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Varpa_1543
Ribosome biogenesis [BR:vpe03009]
 Eukaryotic type
  90S particles
   RNase
    Varpa_1543
 Prokaryotic type
  rRNA processing factors
   Varpa_1543
Chromosome and associated proteins [BR:vpe03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     Varpa_1543
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 RM44_endonuclase dsrm PAZ_2
Other DBs
NCBI-ProteinID: ADU35754
UniProt: E6V3H4
LinkDB
Position
1713595..1714281
AA seq 228 aa
MDGSLVALQARLKHSFSDTRLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYTRLS
ALPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIG
AVYLDAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLG
AAHKQTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIRLKARGAA
NT seq 687 nt   +upstreamnt  +downstreamnt
gtggacggcagcctcgtcgcgctgcaggcgcgcctcaagcattcgttctccgatacgcgg
ctgctgcagctcgcgctcacgcaccgcagtttctcggccgaccacaacgagcgccttgag
tttctcggcgactcggtgctcaacctggcggtgtcgcacctgctgtacacgcgactgtcg
gccctgcctgagggcgacttgtcgcgggtgcgggccaacctggtcaagcaggacaccctg
caccgcctggcgctcgaactccagctgtcgccgctgctgcggctcggcgagggcgaggcg
cgttcgggcggtcccaaccggccctcgatcctggccgacgcgctcgaggcgctgatcggt
gcggtctacctcgatgcgggctttgcagccgccgaggcgctggtgcgccgcctgtacgaa
tcggtcgagatcactccgcgcatggaagcggcggccaaggacccgaaaaccgaattgcag
gaatggctgcagggccacaaaatgaagctgccgatgtatcgcgtggccgcgacgctgggt
gcagcgcacaaacagactttcgatgtcgagtgcgaggtgcccgagttgggctttcgcgaa
cgcggcatcggcggctcgcgccgcgccggcgagcaggctgccgcggctgccatgctgatc
cggctcaaggcacgcggcgccgcgtga

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