Variovorax paradoxus EPS: Varpa_1543
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Entry
Varpa_1543 CDS
T01392
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Varpa_1543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpe03019
]
Varpa_1543
03009 Ribosome biogenesis [BR:
vpe03009
]
Varpa_1543
03036 Chromosome and associated proteins [BR:
vpe03036
]
Varpa_1543
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Varpa_1543
Messenger RNA biogenesis [BR:
vpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Varpa_1543
Ribosome biogenesis [BR:
vpe03009
]
Eukaryotic type
90S particles
RNase
Varpa_1543
Prokaryotic type
rRNA processing factors
Varpa_1543
Chromosome and associated proteins [BR:
vpe03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Varpa_1543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
RM44_endonuclase
dsrm
PAZ_2
Motif
Other DBs
NCBI-ProteinID:
ADU35754
UniProt:
E6V3H4
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All DBs
Position
1713595..1714281
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AA seq
228 aa
AA seq
DB search
MDGSLVALQARLKHSFSDTRLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYTRLS
ALPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIG
AVYLDAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLG
AAHKQTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIRLKARGAA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
gtggacggcagcctcgtcgcgctgcaggcgcgcctcaagcattcgttctccgatacgcgg
ctgctgcagctcgcgctcacgcaccgcagtttctcggccgaccacaacgagcgccttgag
tttctcggcgactcggtgctcaacctggcggtgtcgcacctgctgtacacgcgactgtcg
gccctgcctgagggcgacttgtcgcgggtgcgggccaacctggtcaagcaggacaccctg
caccgcctggcgctcgaactccagctgtcgccgctgctgcggctcggcgagggcgaggcg
cgttcgggcggtcccaaccggccctcgatcctggccgacgcgctcgaggcgctgatcggt
gcggtctacctcgatgcgggctttgcagccgccgaggcgctggtgcgccgcctgtacgaa
tcggtcgagatcactccgcgcatggaagcggcggccaaggacccgaaaaccgaattgcag
gaatggctgcagggccacaaaatgaagctgccgatgtatcgcgtggccgcgacgctgggt
gcagcgcacaaacagactttcgatgtcgagtgcgaggtgcccgagttgggctttcgcgaa
cgcggcatcggcggctcgcgccgcgccggcgagcaggctgccgcggctgccatgctgatc
cggctcaaggcacgcggcgccgcgtga
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