Variovorax paradoxus EPS: Varpa_1545
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Entry
Varpa_1545 CDS
T01392
Name
(GenBank) DNA repair protein RecO
KO
K03584
DNA repair protein RecO (recombination protein O)
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Varpa_1545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_1545
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Varpa_1545
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Varpa_1545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecO_N
RecO_C
Motif
Other DBs
NCBI-ProteinID:
ADU35756
UniProt:
E6V3H6
LinkDB
All DBs
Position
1715259..1716032
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AA seq
257 aa
AA seq
DB search
MAAAHRVSHEPAYVLHRYDWSESSLILEVFTRHHGRIALVAKGAKRPSSNFRPVLLPLQP
LQLNYGGDAEIRTLKGAEWMGGHVMPTGEALLSGYYINELLLRLLARDDAHEALFDAYAG
VVQVLAGDHVGAQAATQAAALRAFELILLREVGLLPSLDVQTLTLEPLDAGARYSLVPEA
GLRTAMEGEAGLVGADWQTLQAVLDDRAPFTATLREIATMNAGSNSALRNQLRALLNYHC
GVSTLRTRQMMRDLQAL
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
gtggccgctgcccaccgcgtttcgcacgaaccggcatacgtgcttcatcgctacgactgg
agcgagtcgagcctgattctggaggtcttcacccggcaccatgggcgcatcgcgctggtg
gccaagggggcgaagcggccgagttccaatttcaggccggtgctgctgccgctgcagccg
ctgcagctcaattacggcggcgatgccgagatccgcacgctcaagggcgcggagtggatg
ggcggccatgtcatgccgacaggcgaggcactgctctcgggctactacatcaatgaattg
ctgctgcgcctcctggcgcgcgacgacgcgcacgaggcgctcttcgacgcctatgccggc
gtggtgcaggtgctggcgggcgaccatgtcggggcccaggcggcaacccaggccgccgcg
ctgcgcgccttcgaactgatcctgctgcgcgaagtcggcctgctgccctcgctcgacgtg
cagacgctgaccctggagccgctcgacgccggcgcgcgctacagcctcgtccccgaggcg
ggacttcgtacggcgatggagggcgaagccggcctggtcggtgccgactggcagaccctg
caagccgtgctcgacgaccgtgcgcccttcaccgccaccctgcgcgaaattgccaccatg
aacgccggcagcaacagcgccctcagaaaccagctgcgcgccttgctcaactaccattgc
ggcgtgtccacgctgcgcacgcggcaaatgatgagagatctgcaagcactatga
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